Fixed calculation of transcript display_xrefs; wasn't considering translation-transcript relationship properly.

Now use | as separator character in composite hash keys; : was a bad choice since it appears in GO xrefs.

Don't write xref/object_xrefs for sources that have no corresponding external_db entry (but warn about this).

Set label to accession if it's not set otherwise (so that something gets displayed on the web site).

Check all object_xrefs are unique.

Still problem with gene display_xrefs.

Improved usage docs.

No longer write external_db table from source table, since external_db is defined in CVS. Now builds source_idd->external_db_id mapping and writes external_db_id to xref.txt.

Added external_db and version to core xref output.

Improved usage docs.

Handles a karyotype containing non-existant chromosomes.  Warns, returns no bands for non-existant chr, but no longer dies deep in BaseFeatureAdaptor

changed an if defined to an if as 0 and '' shouldn't be considered true in that case