Commits · c3ffa2e9467f6274c152a2d1a6a62f70469b42d0 · ensembl-gh-mirror / ensembl

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Oct 10, 2001
- Again a use call was not made · c3ffa2e9
  Emmanuel Mongin authored 23 years ago
  
  c3ffa2e9
- Now uses internal ids for proteins · 004c7afb
  Emmanuel Mongin authored 23 years ago
  
  004c7afb
- Now uses internal Ids for protein objectXref · bd82c8bb
  Emmanuel Mongin authored 23 years ago
  
  bd82c8bb
- SQL statement was trying to insert a contig_id in the supporting_feature table... · 0ab78080
  Emmanuel Mongin authored 23 years ago
```
SQL statement was trying to insert a contig_id in the supporting_feature table whereas there is not this field in it. If I missed something...shout.
```
  0ab78080
- some changes to the exists method: · a6e55012
  wormpipe authored 23 years ago
```
  returns now the dbID of th analysis or undef

  changed the while loop into a foreach loop
  (since this iteration was over a global variable,
   a new "iteration" started where the old one stopped,
   rather than at the beginning)

ms2
```
  a6e55012
- use call to Sticky Exon was missing · 96d03cb5
  Emmanuel Mongin authored 23 years ago
  
  96d03cb5
Oct 09, 2001
- Fixed yet more old-schema SQL. Also added a fetch_Protein_by_translationId call · a5f16939
  Web Admin authored 23 years ago
  
  a5f16939
- Added more space for the db and db_file column in the analysisprocess table · 2ec9254b
  Emmanuel Mongin authored 23 years ago
  
  2ec9254b
Oct 08, 2001
- Chromosomal DAS global coordinate support · 7a9a1959
  Web Admin authored 23 years ago
  
  7a9a1959
- idirect mapping: first try. · cde8ce69
  Arne Stabenau authored 23 years ago
  
  cde8ce69
Oct 06, 2001
- lace acedb fix · 598f5b73
  humpub authored 23 years ago
  
  598f5b73
Oct 05, 2001
- dumping to *.txt rather than .dat · d93b31f4
  Philip Lijnzaad authored 23 years ago
  
  d93b31f4
- select distinct ... · 3838cdc2
  Philip Lijnzaad authored 23 years ago
  
  3838cdc2
- select distinct * ... · 6a38dcb1
  Philip Lijnzaad authored 23 years ago
  
  6a38dcb1
- select distinct ... · 080b8688
  Philip Lijnzaad authored 23 years ago
  
  080b8688
- select distinct ... · 14ba6102
  Philip Lijnzaad authored 23 years ago
  
  14ba6102
- select distinct ... · a57c76e4
  Philip Lijnzaad authored 23 years ago
  
  a57c76e4
- *** empty log message *** · 924e84d8
  Philip Lijnzaad authored 23 years ago
  
  924e84d8
- new code for sticky supporting evidence · 4654fcb4
  Arne Stabenau authored 23 years ago
  
  4654fcb4
- made key not NULLable, where necessary (some of them were already not null, · 803d4542
  Philip Lijnzaad authored 23 years ago
```
so I don't know why the dump from the ensrv1 tables said they where).
```
  803d4542
Oct 04, 2001
- added embl dumping · 55d12dec
  Philip Lijnzaad authored 23 years ago
  
  55d12dec
- pair programming by Arne and Ewan squashed StickyExon bug. Much fun. · 7e788e87
  Ewan Birney authored 23 years ago
  
  7e788e87
Oct 03, 2001
- added SNPs · ee30934f
  Philip Lijnzaad authored 23 years ago
  
  ee30934f
- more checking, and using same naming as web instructions · a3d5f871
  Philip Lijnzaad authored 23 years ago
  
  a3d5f871
- *** empty log message *** · 75991f6b
  Philip Lijnzaad authored 23 years ago
  
  75991f6b
- new version of idmapping · 5a7c4d0f
  Arne Stabenau authored 23 years ago
```
temporary. Shall be replaced with a java version...
```
  5a7c4d0f
- modified slightly to prevent 'dangly features' · 20d81612
  Ensembl Pipeline authored 23 years ago
```
scp
```
  20d81612
- less fatal · 80fe380a
  Ensembl Pipeline authored 23 years ago
```
scp
```
  80fe380a
- made 'strict' · e737f2ef
  Ensembl Pipeline authored 23 years ago
```
scp
```
  e737f2ef
- added expression · 32449642
  Philip Lijnzaad authored 23 years ago
  
  32449642
- added maps · a8386f14
  Philip Lijnzaad authored 23 years ago
  
  a8386f14
- added disease · 6d5c51d6
  Philip Lijnzaad authored 23 years ago
  
  6d5c51d6
Oct 02, 2001
- as make_dbdump_bychr, but for the sattelite databases (family, disease, ... · db14fadd
  Philip Lijnzaad authored 23 years ago
```
as make_dbdump_bychr, but for the sattelite databases (family, disease,  etc.). So far, only family, more coming (hopefully)
```
  db14fadd
- a few extra checks, password option and better defaults · d4b88372
  Philip Lijnzaad authored 23 years ago
  
  d4b88372
Oct 01, 2001
- start of a test module for Bio::EnsEMBL::Mapper our first coordinate · 1964891f
  Arne Stabenau authored 23 years ago
```
mapping approach by Ewan.
```
  1964891f
- less strict checking of id_regexp · 0b195e02
  Philip Lijnzaad authored 23 years ago
  
  0b195e02
- repeated variable declaration fixed in fetch_by_geneId method · 9f2754df
  Eduardo Eyras authored 23 years ago
  
  9f2754df
- added MapperCoordinate. About to work up to Mapper object itself · 2a2b60f9
  Ewan Birney authored 23 years ago
  
  2a2b60f9
Sep 30, 2001
- commenting out test for simple feature refactoring · b1bdd3c8
  Ewan Birney authored 23 years ago
  
  b1bdd3c8
- added fetch_Genes_by_contig_list - needed for Ensembl compara and could take... · 37f5c581
  Ewan Birney authored 23 years ago
```
added fetch_Genes_by_contig_list - needed for Ensembl compara and could take things off StaticContig
```
  37f5c581