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- Jan 24, 2012
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Steve Trevanion authored
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Andy Yates authored
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- Jan 23, 2012
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Arnaud Kerhornou authored
Updated logic_name XrefExeonerateProtein and XrefExeonerateDNA to all lower cases to match the production database
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Andy Yates authored
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- Jan 19, 2012
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Andy Yates authored
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- Jan 18, 2012
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Rhoda Kinsella authored
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Andy Yates authored
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- Jan 17, 2012
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Andy Yates authored
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Andy Yates authored
Program is now executable and also attempts to diagnose the issues a user can face when setting up the API.
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Andy Yates authored
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Andy Yates authored
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Kieron Taylor authored
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Andy Yates authored
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Stephen Keenan authored
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- Jan 16, 2012
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Monika Komorowska authored
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Andy Yates authored
Adding in methods to retrieve repeat types from repeat_consensus. Also increased the number of types we can limit by at once
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Andy Yates authored
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Kieron Taylor authored
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Monika Komorowska authored
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Monika Komorowska authored
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Monika Komorowska authored
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Monika Komorowska authored
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Monika Komorowska authored
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- Jan 13, 2012
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Andy Yates authored
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Andy Yates authored
Applying a fix for when the schema patcher is run from the misc-scripts directory and now default it to the current directory if no directory is extracted from __FILE__. We also have improved the warning about missing directories
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Andy Yates authored
Changes to allow for a global path setting to be given as well as delegating to the meta table. Also made the data_file be able to hand back the external data adaptor
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- Jan 12, 2012
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Andy Yates authored
Bugfix for issue raised by Michael Nuhn from Ensembl Genomes. fetch_all_by_Transcript_list() incorrectly assigned the canonical translation ID
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Andy Yates authored
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Andy Yates authored
Pushing in a non-interactive mode. Important since some people are happy to do dry runs & then apply
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
Patched to compute the location of the directory from the schema patcher file location and not assuming a user will execute this script from the misc-scripts directory. This reduces the need to use --cvsdir so much. We also do some sanity checking to make sure we can find the schema file in the directory which reports to be the SQL dir
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Andy Yates authored
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Kieron Taylor authored
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Kieron Taylor authored
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Monika Komorowska authored
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- Jan 11, 2012
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Andy Yates authored
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Andy Yates authored
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Andy Yates authored
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Kieron Taylor authored
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