Commits · d72c9dbd09790da2e4097af5a88c7e54dbdaa256 · ensembl-gh-mirror / ensembl

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Jan 03, 2012
- Further spelling and grammar adjustments · d72c9dbd
  Kieron Taylor authored 13 years ago
  
  d72c9dbd
- Spelling corrections · 385d5ab7
  Kieron Taylor authored 13 years ago
  
  385d5ab7
- updated LRG import instructions · c2333ea8
  Monika Komorowska authored 13 years ago
  
  c2333ea8
- updated schema for rel 66 · a5c80b3b
  Monika Komorowska authored 13 years ago
  
  a5c80b3b
Dec 23, 2011
- added && · 1dcce07d
  Monika Komorowska authored 13 years ago
  
  1dcce07d
- sql to get xrefs with failed priority produces duplicate xref_ids, added... · aec73c91
  Monika Komorowska authored 13 years ago
```
sql to get xrefs with failed priority produces duplicate xref_ids, added IGNORE to INSERT statement for xref
```
  aec73c91
Dec 22, 2011
- Filtering more GO annotations associated with SGD ncRNA transcripts · b4efc43a
  Arnaud Kerhornou authored 13 years ago
  
  b4efc43a
- added patch identifier · fdae2a77
  Monika Komorowska authored 13 years ago
  
  fdae2a77
- new index on object_xref_id in ontology_xref table · e3d7a272
  Monika Komorowska authored 13 years ago
  
  e3d7a272
Dec 21, 2011
- Filter out SGD ncRNA GO associations to simplify the maintenance · 61e8674a
  Arnaud Kerhornou authored 13 years ago
  
  61e8674a
- commented source UniProt::DIRECT for S.cer and updated SGD mapping file URL · 3596b82e
  Arnaud Kerhornou authored 13 years ago
  
  3596b82e
Dec 20, 2011
- added method fetch_all · e07a9e78
  Monika Komorowska authored 13 years ago
  
  e07a9e78
- Fixed bug when a column description content is missing. · ad66f364
  Laurent Gil authored 13 years ago
  
  ad66f364
- Corrected description of canonical_translation_id in the transcript table. · 11170b50
  Monika Komorowska authored 13 years ago
  
  11170b50
Dec 19, 2011
- delete unnecessary comma · 58c25848
  Monika Komorowska authored 13 years ago
  
  58c25848
- delete unnecessary comma · c148766d
  Monika Komorowska authored 13 years ago
  
  c148766d
Dec 14, 2011
- default dir is dumps when version isn't given · 6286788c
  Andy Yates authored 13 years ago
  
  6286788c
- Relaxing rules WRT not requiring -version when using -defaults · 49395a3d
  Andy Yates authored 13 years ago
  
  49395a3d
- change to usage section · e7f0eaa5
  Monika Komorowska authored 13 years ago
  
  e7f0eaa5
- Adding a check in here to highlight when a regular expression failed to match... · 28ba6e07
  Andy Yates authored 13 years ago
```
Adding a check in here to highlight when a regular expression failed to match meaning we've found a corrupted schema patch identifier which should be removed
```
  28ba6e07
- Bit more info in the docs · cf270c2e
  Andy Yates authored 13 years ago
  
  cf270c2e
- Letting the config file specify just SQL dumps · 1500913c
  Andy Yates authored 13 years ago
  
  1500913c
- Documentation updates · 37fbcb34
  Andy Yates authored 13 years ago
  
  37fbcb34
- Commit of the core DB populator script · e72a3465
  Andy Yates authored 13 years ago
  
  e72a3465
- fix usage of dry_run parameter · ad051607
  Monika Komorowska authored 13 years ago
  
  ad051607
Dec 13, 2011
- Don't pass null into a column that is not allowed to have null as value, · bc44e9db
  epaule authored 13 years ago
```
will use 0 instead
```
  bc44e9db
- don't use TYPE= that has been deprecated years ago and doesn't work anymore · 73e17e45
  epaule authored 13 years ago
  
  73e17e45
- Added new species, gaeumannomyces_graminis · adfad7be
  Arnaud Kerhornou authored 13 years ago
  
  adfad7be
- Documentation update · 4dfd9ecf
  Andy Yates authored 13 years ago
  
  4dfd9ecf
- use the default column value instead of an empty string as version · 6b4df2c3
  epaule authored 13 years ago
  
  6b4df2c3
- the BaseParser expects error_codes and no fatal errors to work around checking... · 537bf49e
  epaule authored 13 years ago
```
the BaseParser expects error_codes and no fatal errors to work around checking for existence of xrefs,
so I turned them off again
```
  537bf49e
Dec 12, 2011
- unique genes method (for assembly patches), interactive does have an argument,... · 0ce0ebf5
  Steve Trevanion authored 13 years ago
```
unique genes method (for assembly patches), interactive does have an argument, other binaries default to 1 if nothing specified
```
  0ce0ebf5
- * fixed the UniProt version parsing · 56da698e
  epaule authored 13 years ago
```
* reenabled text SQL error messages, as error codes make it impossible to find out which error happened in which statement
```
  56da698e
- added section counting the size and mapping percentage of continuous runs of projections · a6a7816b
  Monika Komorowska authored 13 years ago
  
  a6a7816b
Dec 09, 2011
- Typo in POD of get_Gene method. · 67a07432
  Kieron Taylor authored 13 years ago
  
  67a07432
Dec 08, 2011
- updated patch identifiers · 35efd363
  Monika Komorowska authored 13 years ago
  
  35efd363
- Reorder an index in unmapped_object · 021d2e8f
  Monika Komorowska authored 13 years ago
  
  021d2e8f
- external_db_id definition change · e6a65b25
  Monika Komorowska authored 13 years ago
  
  e6a65b25
- schema version update · 64776949
  Monika Komorowska authored 13 years ago
  
  64776949
- schema version update · 2195ced6
  Monika Komorowska authored 13 years ago
  
  2195ced6