Commits · d83da7fbe94bd7fcb3205bf26971c9507bc9fdba · ensembl-gh-mirror / ensembl

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Dec 15, 2004
- Speed up gene display_xref generation by only fetching transcripts when required. · d83da7fb
  Glenn Proctor authored 20 years ago
  
  d83da7fb
- fix to stop more connections being generated for the same connection · 25ea5e55
  Ian Longden authored 20 years ago
  
  25ea5e55
- Added support for uploading generated xrefs etc directly. · 01d230ec
  Glenn Proctor authored 20 years ago
  
  01d230ec
- *** empty log message *** · 3fb785db
  Glenn Proctor authored 20 years ago
  
  3fb785db
- Added note about unsetting display_xrefs as well. · 352290d9
  Glenn Proctor authored 20 years ago
  
  352290d9
- Make error message about non downloading-file more informative. · 4812e670
  Glenn Proctor authored 20 years ago
  
  4812e670
- Stip leading & trailing whitespace from description. · b26f5d06
  Glenn Proctor authored 20 years ago
  
  b26f5d06
Dec 14, 2004
- minor fix for new Glovar code, disabled uninitialized warnings · 2864d012
  Patrick Meidl authored 20 years ago
  
  2864d012
- Checks wget return code; ftp servers sometimes refuse anonymous login due to too many users. · 3c63d24c
  Glenn Proctor authored 20 years ago
  
  3c63d24c
- *** empty log message *** · d4898c22
  Glenn Proctor authored 20 years ago
  
  d4898c22
- Added -upload option. · 65e8a556
  Glenn Proctor authored 20 years ago
```
Improved usage docs.
```
  65e8a556
- added Ensembl Gene Location type to the DAS source · 9a77e180
  Eugene Kulesha authored 20 years ago
  
  9a77e180
Dec 13, 2004
- No longer write external_db table from source table, since external_db is... · d0aad17b
  Glenn Proctor authored 20 years ago
```
No longer write external_db table from source table, since external_db is defined in CVS. Now builds source_idd->external_db_id mapping and writes external_db_id to xref.txt.

Added external_db and version to core xref output.
```
  d0aad17b
- Removed warning about being unable to find display_xrefs for certain transcripts. · 3f8ec38d
  Glenn Proctor authored 20 years ago
  
  3f8ec38d
- Changed called function name to parse_mappings. · 7e3f4ea8
  Glenn Proctor authored 20 years ago
  
  7e3f4ea8
- Renamed store to parse_mappings. · 9129c9c9
  Glenn Proctor authored 20 years ago
  
  9129c9c9
- Added method-specific query and identity thresholds. · ced0b0a5
  Glenn Proctor authored 20 years ago
  
  ced0b0a5
- Finding max existing ids now done more elegantly with selectall_arrayref. · 7032140c
  Glenn Proctor authored 20 years ago
  
  7032140c
- Typo. · cfd9d305
  Glenn Proctor authored 20 years ago
  
  cfd9d305
- Renamed run_matching to build_list_and_map. · 34ba09a8
  Glenn Proctor authored 20 years ago
  
  34ba09a8
Dec 10, 2004
- Added more information to usage. · 5793b1ad
  Glenn Proctor authored 20 years ago
  
  5793b1ad
- Added warning about always running as mysqlens. I always forget. · ced11427
  Glenn Proctor authored 20 years ago
  
  ced11427
Dec 09, 2004
- added support for created_date and modified_date in gene,exon,transcript and translation · cb382499
  Arne Stabenau authored 20 years ago
  
  cb382499
- basic read suport tests for created_date and modified_date · cc79c932
  Arne Stabenau authored 20 years ago
  
  cc79c932
- removed comparison to undef · 9bc39fa7
  Arne Stabenau authored 20 years ago
  
  9bc39fa7
- changed number of tests · d8a660a0
  Arne Stabenau authored 20 years ago
  
  d8a660a0
- more peptide name changes typer fixes · a1833b48
  Ian Longden authored 20 years ago
  
  a1833b48
- added .0 to exonerate exe name · 5e04b1fc
  Ian Longden authored 20 years ago
  
  5e04b1fc
- peptide file now not prot · 75cf38aa
  Ian Longden authored 20 years ago
  
  75cf38aa
- Tidied up error message. · e2df72bb
  Glenn Proctor authored 20 years ago
  
  e2df72bb
- Added support for setting release. · ee4dc586
  Glenn Proctor authored 20 years ago
  
  ee4dc586
- Added -setrelease parameter. · 137de37c
  Glenn Proctor authored 20 years ago
```
Improved usage docs.
```
  137de37c
- Handles a karyotype containing non-existant chromosomes. Warns, returns no... · b6533768
  Web Admin authored 20 years ago
```
Handles a karyotype containing non-existant chromosomes.  Warns, returns no bands for non-existant chr, but no longer dies deep in BaseFeatureAdaptor
```
  b6533768
- · 18242ae9
  Laura Clarke authored 20 years ago
```
changed an if defined to an if as 0 and '' shouldn't be considered true in that case
```
  18242ae9
- Simplified synonym selection SQL due to table structure change. · 3d1c581a
  Glenn Proctor authored 20 years ago
  
  3d1c581a
- Synonym loading is simplified now that synonyms are stored as strings rather than xrefs. · 14a9cba9
  Glenn Proctor authored 20 years ago
  
  14a9cba9
- Changed synonym table to store synonyms as strings, not as "whole" xrefs. · f3c857c9
  Glenn Proctor authored 20 years ago
  
  f3c857c9
- Join description line components with a space 'cos that's how SP splits them. · ada092c0
  Glenn Proctor authored 20 years ago
  
  ada092c0
- Now deals correctly with multi-line AC and DE blocks. · a0e9d8f3
  Glenn Proctor authored 20 years ago
  
  a0e9d8f3
- fetch_by_display_label tested · 420b3096
  Arne Stabenau authored 20 years ago
  
  420b3096