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- Jan 03, 2014
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Magali Ruffier authored
if filename is specified, will save source to file rather than in an array good for big downloads
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- Dec 17, 2013
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Magali Ruffier authored
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- Dec 12, 2013
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Magali Ruffier authored
returns the attribute object associated to a given statistic updated POD documentation
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- Dec 11, 2013
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Alessandro Vullo authored
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Alessandro Vullo authored
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Andy Yates authored
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Andy Yates authored
We can no longer use the REST endpoint http://www.ebi.ac.uk/gxa/dataExport/organisms so have switched to using their FTP site and some regex patterns against the file names. Whilst not as nice as the rest endpoint it does seem to work
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ens-carlos authored
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Magali Ruffier authored
if ignore release is set for the main xref, it should be inherited by the dependent xrefs as well
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- Dec 10, 2013
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Magali Ruffier authored
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Magali Ruffier authored
unique constraint on _attrib tables, there should only be one value for a given object and attrib_type
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- Dec 09, 2013
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Andreas Kusalananda Kähäri authored
Adding missing "use warnings" and "use strict".
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Andreas Kusalananda Kähäri authored
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Kevin Howe authored
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Magali Ruffier authored
added data for transcript count in genome_statistics test data added test for get_transcripts and get_alt_transcripts in genomecontainer
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- Dec 06, 2013
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Magali Ruffier authored
source column in transcript now has a default value 'ensembl' when patching databases, will set transcript source to whatever source the corresponding gene is
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
exists on gene object, now also on transcript object
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Magali Ruffier authored
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ens-carlos authored
- Added 'sql_file' option to be able to specify the 'sql.txt' file name.
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- Dec 05, 2013
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
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Magali Ruffier authored
generated test data for patch test database database patched up to release 75
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Magali Ruffier authored
creation of a new genome_statistics table
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Alessandro Vullo authored
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Alessandro Vullo authored
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Alessandro Vullo authored
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Alessandro Vullo authored
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Magali Ruffier authored
checking total length, not ref
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Magali Ruffier authored
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Alessandro Vullo authored
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Alessandro Vullo authored
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Alessandro Vullo authored
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Alessandro Vullo authored
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Alessandro Vullo authored
Added method count_all_by_biotype as in GeneAdaptor.
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