Commits · e13437376bd2cb08de5def3ab99b7b79dacf346e · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring failed 2 months ago.
Repository mirroring has been paused due to too many failed attempts. It can be resumed by a project maintainer or owner.
Last successful update 5 months ago.

Jun 11, 2003
- small typo in sql query in store method · e1343737
  Stephen Keenan authored 21 years ago
  
  e1343737
- storing should now properly handle xrefs relating to Genes, Transcripts, Translations (untested) · 7e87c040
  Graham McVicker authored 21 years ago
  
  7e87c040
- added get_all_DBEntries methods, changed get_all_DBLinks implementation to reflect DBEntry changes · b6c11600
  Graham McVicker authored 21 years ago
  
  b6c11600
- fetch_all_by_Xxxxx methods made more sensible · 3838a456
  Graham McVicker authored 21 years ago
  
  3838a456
Jun 10, 2003
- added get_all_DBLinks method · e6167b5b
  Stephen Keenan authored 21 years ago
  
  e6167b5b
- added xref storing · f871f1bb
  Stephen Keenan authored 21 years ago
  
  f871f1bb
- Fix broken xref storing · 53713148
  Stephen Keenan authored 21 years ago
  
  53713148
- fix to broken fetch_all_by_Gene method · 479deb18
  Stephen Keenan authored 21 years ago
  
  479deb18
- new go_xref table definition · 20540306
  Arne Stabenau authored 21 years ago
  
  20540306
Jun 06, 2003
- · ae2f1f15
  Laura Clarke authored 21 years ago
```
extra option for elegans
```
  ae2f1f15
Jun 05, 2003
- removed from here, moved to ensembl/misc-scripts · 3c4fb39f
  Abel Ureta-Vidal authored 21 years ago
  
  3c4fb39f
- moved gene-descriptions.pl from ensembl/script to here and made it more generic · 18e38f73
  Abel Ureta-Vidal authored 21 years ago
  
  18e38f73
Jun 04, 2003
- *** empty log message *** · b419d27d
  Emmanuel Mongin authored 21 years ago
  
  b419d27d
- GoXref modifications · 3130038e
  Arne Stabenau authored 21 years ago
  
  3130038e
- test DBEntry and Adaptor · 61894965
  Arne Stabenau authored 21 years ago
  
  61894965
Jun 02, 2003
- added go_xref tables and test data · 9f02a3cb
  Arne Stabenau authored 21 years ago
  
  9f02a3cb
- GoXref have an added linkage_type for an Xref. Currently one of... · faa8632d
  Arne Stabenau authored 21 years ago
```
GoXref have an added linkage_type for an Xref. Currently one of "computational", "experimentl" or "curated"
```
  faa8632d
- first shot at GoXref with linkage_type information. · 45a2da23
  Arne Stabenau authored 21 years ago
  
  45a2da23
- new_fast sets synonym arrayref to [] · a70b95b1
  Graham McVicker authored 21 years ago
  
  a70b95b1
May 30, 2003
- added name index to chromosome · 8be1aa85
  Web Admin authored 21 years ago
  
  8be1aa85
- eval sql connection to see if table does exist - it doesnt have to · 1e9f75f9
  Web Admin authored 21 years ago
  
  1e9f75f9
May 29, 2003
- Getting the ArchiveStableId Adaptor · 072d45dc
  Arne Stabenau authored 21 years ago
  
  072d45dc
- bug fix · 3f294074
  Arne Stabenau authored 21 years ago
  
  3f294074
- fixed the method guess phases... still pretty dodgy · 99b2c5f0
  Emmanuel Mongin authored 21 years ago
  
  99b2c5f0
May 28, 2003
- bugfix · 10818107
  Arne Stabenau authored 21 years ago
  
  10818107
- stable_id_events, mapping_sessions, gene_archive, peptide_archive added · 0f3f92b6
  Arne Stabenau authored 21 years ago
  
  0f3f92b6
- Test file for archiveStableIds and adaptor · 29364805
  Arne Stabenau authored 21 years ago
  
  29364805
- Added some docs · d2a623a0
  Arne Stabenau authored 21 years ago
  
  d2a623a0
May 27, 2003
- Renamed a function · 1081d2cc
  Arne Stabenau authored 21 years ago
  
  1081d2cc
- Added some comments, some functions got renamed. · eb22cdf1
  Arne Stabenau authored 21 years ago
  
  eb22cdf1
- Core interaction with stable id archive done. Comments added. · 9540df46
  Arne Stabenau authored 21 years ago
  
  9540df46
- Deprecated script · bf2754ce
  Abel Ureta-Vidal authored 21 years ago
  
  bf2754ce
- Deprecated script · 2bed7638
  Abel Ureta-Vidal authored 21 years ago
  
  2bed7638
May 22, 2003
- returns undef if a seq is made of polyA or polyT only. such a thing should not be kept · 722d1469
  Eduardo Eyras authored 21 years ago
  
  722d1469
- clip_ends method moved elsewhere · 2a03e08d
  Eduardo Eyras authored 21 years ago
  
  2a03e08d
- added method to clip sequences on both ends, the length to be clipped is passed as an argument · dfe5663c
  Eduardo Eyras authored 21 years ago
  
  dfe5663c
- minor changes towards 14 release · f096291e
  Arne Stabenau authored 21 years ago
  
  f096291e
May 21, 2003
- added fetch_by_stable_id method · 1abbe87c
  Graham McVicker authored 21 years ago
  
  1abbe87c
- added test for PredictionTranscriptAdaptor::fetch_by_stable_id · ddcc52da
  Graham McVicker authored 21 years ago
  
  ddcc52da
- added update_key_value method · 4b0183f7
  Abel Ureta-Vidal authored 21 years ago
  
  4b0183f7