Commits · e27323b2c0d7cd0790791c35df5c81b9fa69857f · ensembl-gh-mirror / ensembl

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Nov 08, 2011

merge in changes from ensembl-64 for retrieving non-reference slices. Don't... · e27323b2

Steve Trevanion authored 13 years ago

merge in changes from ensembl-64 for retrieving non-reference slices. Don't need to supply a value for logappend, verbose, interactive and dry_run parameters

e27323b2

Nov 07, 2011
- that was careless · 1c4deee2
  Steve Trevanion authored 13 years ago
  
  1c4deee2
- nolog should override other log params · 6db91d74
  Steve Trevanion authored 13 years ago
  
  6db91d74
Oct 19, 2011
- merging changes from branch-ensembl-64 · ad3ae9e9
  Simon Brent authored 13 years ago
  
  ad3ae9e9
Oct 17, 2011
- changes related to stable_id merge · 08f2a002
  Monika Komorowska authored 13 years ago
  
  08f2a002
Aug 12, 2011
- merging changes from branch-ensembl-63 · bf762334
  Simon Brent authored 13 years ago
  
  bf762334
Jun 10, 2011
- tweaks to automatic logging · de639b78
  Steve Trevanion authored 13 years ago
  
  de639b78
Jun 09, 2011
- Remain Pod tweaks. Majority of errors removed ready for Doxygen · 9dacbe88
  Kieron Taylor authored 13 years ago
  
  9dacbe88
Mar 01, 2011
- now uses log_base_path option. If not set, logfil;e & logpath work as previously · 9f90c98f
  Maurice Hendrix authored 14 years ago
  
  9f90c98f
- added option nolog · 1b3e420a
  Maurice Hendrix authored 14 years ago
```
-nolog 1 will dump the output to stdout
```
  1b3e420a
Feb 10, 2011
- merged previous chenge into latest version on the HEAD · 5ba5bb39
  Maurice Hendrix authored 14 years ago
  
  5ba5bb39
Jan 05, 2011
- Update copyright year for 2011. · 169920f3
  Andreas Kusalananda Kähäri authored 14 years ago
  
  169920f3
Aug 16, 2010
- Change the Ensembl developers list email address in all modules from · 83e0894d
  Andreas Kusalananda Kähäri authored 14 years ago
```
<ensembl-dev@ebi.ac.uk> to <dev@ensembl.org>.
```
  83e0894d
Mar 17, 2010
- whitespace, remove old Glovar method! · e1f51a8b
  Steve Trevanion authored 15 years ago
  
  e1f51a8b
Feb 24, 2010
- tidier · e9be4d92
  Steve Trevanion authored 15 years ago
  
  e9be4d92
Feb 09, 2010
- merge from branch-ensembl-dec09 · 6c9580d1
  Steve Trevanion authored 15 years ago
  
  6c9580d1
Feb 02, 2010
- Update year in Copyright notice. · 6b9a6526
  Andreas Kusalananda Kähäri authored 15 years ago
  
  6b9a6526
Aug 03, 2009
- get duplicates if requested, chr Y hack · 5809543b
  Steve Trevanion authored 15 years ago
  
  5809543b
Apr 20, 2009
- merge from 49-dev · 8f5a9b67
  Steve Trevanion authored 15 years ago
  
  8f5a9b67
Apr 08, 2009
- whitespace · f09df535
  Steve Trevanion authored 15 years ago
  
  f09df535
Mar 04, 2009
- Streamline LICENSE, CONTACT, and AUTHOR sections in POD. · 188692f6
  Andreas Kusalananda Kähäri authored 16 years ago
```
Formatting of SYNOPSIS code.

Passes unit tests.
```
  188692f6
Mar 26, 2008
- *** empty log message *** · 854b2361
  Steve Trevanion authored 16 years ago
  
  854b2361
Feb 19, 2008
- merge from vega-46-dev · 50b40137
  Steve Trevanion authored 17 years ago
  
  50b40137
Sep 07, 2007
- merge from vega-44-dev · 9f0cd750
  Web Admin authored 17 years ago
  
  9f0cd750
Jun 04, 2007
- merge from vega-43-dev · ead77bd8
  Web Admin authored 17 years ago
  
  ead77bd8
Mar 12, 2007
- merge from vega-41-dev · 35a7f394
  Steve Trevanion authored 18 years ago
  
  35a7f394
Jul 10, 2006
- be laconic :) · bf4e040c
  Leo Gordon authored 18 years ago
  
  bf4e040c
- bug fix to cope with empty db passwords · 79d8611c
  Patrick Meidl authored 18 years ago
  
  79d8611c
- merge from branch-vega-38-dev · 40880d0f
  Steve Trevanion authored 18 years ago
  
  40880d0f
May 10, 2006
- added commify() · db881e98
  Patrick Meidl authored 18 years ago
  
  db881e98
May 08, 2006
- added get_dbconnection() · 8c36d61c
  Patrick Meidl authored 18 years ago
  
  8c36d61c
Feb 23, 2006
- modified LIMIT to use a function from DBConnection · fdfac377
  Daniel Rios authored 19 years ago
  
  fdfac377
Jan 03, 2006
- changes from branch-vega-35-dev · 94680230
  Patrick Meidl authored 19 years ago
  
  94680230
Oct 20, 2005
- create log dir if not exists · 3e4d08ba
  Patrick Meidl authored 19 years ago
  
  3e4d08ba
Oct 18, 2005
- fix for Registry using wrong dnadb by default · 2d68e138
  Patrick Meidl authored 19 years ago
  
  2d68e138
Sep 29, 2005
- allow $SERVERROOT in Conversion.ini, added get_ensembl_chr_mapping · dabc460e
  Patrick Meidl authored 19 years ago
  
  dabc460e
Sep 26, 2005
- correct location of default configuration file · 778c5fa6
  Steve Trevanion authored 19 years ago
  
  778c5fa6
Aug 31, 2005
- changes from branch-vega-31-dev · cb3f64e1
  Patrick Meidl authored 19 years ago
  
  cb3f64e1
May 17, 2005
- changes from branch-vega-30-dev · aba8ca2c
  Patrick Meidl authored 19 years ago
  
  aba8ca2c
Feb 04, 2005
- fixed config file parser, added get_taxonomy_id() and get_species_scientific_name() · 322b2043
  Patrick Meidl authored 20 years ago
  
  322b2043