Commits · e2bbbc5c7f0c136fd0980e5e20edd9879910d7e4 · ensembl-gh-mirror / ensembl

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Aug 26, 2003
- test data for identity xref alignments · e2bbbc5c
  Arne Stabenau authored 21 years ago
  
  e2bbbc5c
- POD syntax fix · 39529628
  James Gilbert authored 21 years ago
  
  39529628
Aug 22, 2003
- correct the misuse of seqFeature::Generic::get_tag_values · 7f0ddd41
  juguang authored 21 years ago
  
  7f0ddd41
Aug 21, 2003
- More output for create_tables and rotate_daily_tables. Better sth cleanup.... · 3539d040
  Will Spooner authored 21 years ago
```
More output for create_tables and rotate_daily_tables. Better sth cleanup. Nasty split-ticket hack ported from branch
```
  3539d040
- Removed drop/delete from tables for now · eb0c7be5
  Will Spooner authored 21 years ago
  
  eb0c7be5
Aug 20, 2003
- Added daily result table in the same fassion as hit and hsp · 711a95b4
  Will Spooner authored 21 years ago
  
  711a95b4
- Improved blast cleanup routines · 7244c0cb
  Will Spooner authored 21 years ago
  
  7244c0cb
Aug 18, 2003
- Added use_date methods to EnsemblResult type objects. These set the DB tables... · 79a40193
  Will Spooner authored 21 years ago
```
Added use_date methods to EnsemblResult type objects. These set the DB tables to write the HSPs and Hits to. Modified BlastAdaptor accordingly
```
  79a40193
- Fixed SQL error in HSP update · c71e359f
  Will Spooner authored 21 years ago
  
  c71e359f
- Fixed SQL errors in update statements, and fixed UPDATE/STORE issues in object storage methods · 68007cc7
  Will Spooner authored 21 years ago
  
  68007cc7
- new mapfrag test data · 8f5cb248
  Arne Stabenau authored 21 years ago
  
  8f5cb248
- Implemented daily table rotation for hit and hsp tables · 2be0b625
  Will Spooner authored 21 years ago
  
  2be0b625
Aug 15, 2003
- flush internal sequence cache when exon coordinates are altered · 351b35db
  Graham McVicker authored 21 years ago
  
  351b35db
- Abstracted store/retrieve SQL out of EnsemblSearchMulti, EnsemblResult,... · dc48b05d
  Will Spooner authored 21 years ago
```
Abstracted store/retrieve SQL out of EnsemblSearchMulti, EnsemblResult, EnsemblHit and EnsemblHSP, and into appropriate new methods in BlastAdaptor
```
  dc48b05d
Aug 01, 2003
- changes to archive · a2d9bbae
  Web Admin authored 21 years ago
  
  a2d9bbae
- perlized · 145a969d
  Web Admin authored 21 years ago
  
  145a969d
- Added clean_blast_database method · 1166cfd6
  Web Admin authored 21 years ago
  
  1166cfd6
Jul 30, 2003
- Added stable_id_event.type · 38059b8c
  Glenn Proctor authored 21 years ago
  
  38059b8c
Jul 29, 2003
- added max value to max_assembly_contig if not defined · 4e8be8ca
  Emmanuel Mongin authored 21 years ago
  
  4e8be8ca
- Ported fixes from blanch-ensembl-15-1 · 7cf23c3b
  Web Admin authored 21 years ago
  
  7cf23c3b
- converter bioperl SeqFeature as Seg result to ProteinFeature in Ensembl · db768d0f
  juguang authored 21 years ago
  
  db768d0f
Jul 28, 2003
- added get_max_density_per_chromosome · a35f0d3c
  Patrick Meidl authored 21 years ago
  
  a35f0d3c
- saner check for store method · d0cc7085
  juguang authored 21 years ago
  
  d0cc7085
Jul 25, 2003
- remove 4 secs on exon-peptide · 5cf199af
  Brian Gibbins authored 21 years ago
  
  5cf199af
- converter now support for Bio::SearchIO::HSP::GenericHSP to Bio::EnsEMBL::ProteinFeature · 4e3dd78f
  juguang authored 21 years ago
  
  4e3dd78f
Jul 24, 2003
- fix off by one in length of peptide when stop residue is used in sequence · fd1888d9
  Brian Gibbins authored 21 years ago
  
  fd1888d9
Jul 23, 2003
- add query_identity and target_identity tag in the argument of sub new · d83867d8
  juguang authored 21 years ago
  
  d83867d8
- add description tag in the argument of sub new · cbe02044
  juguang authored 21 years ago
  
  cbe02044
- support to convert to ProteinFeature · e46abf5d
  juguang authored 21 years ago
  
  e46abf5d
Jul 22, 2003
- minor changes, formatting · 76b7ff0a
  Arne Stabenau authored 21 years ago
  
  76b7ff0a
- Optimized query for register region · d154c61e
  Arne Stabenau authored 21 years ago
  
  d154c61e
- should be 9 tests not 10 · 4936bb9f
  Graham McVicker authored 21 years ago
  
  4936bb9f
- added some more test data to meta table · 52bf022e
  Graham McVicker authored 21 years ago
  
  52bf022e
- added MetaContainer tests · 485ec9f3
  Graham McVicker authored 21 years ago
  
  485ec9f3
- Use cahching for all values. · 422e390a
  Arne Stabenau authored 21 years ago
```
Added get_max_assembly_contig for optimized queries on assembly table.
```
  422e390a
- changed expected test number from 40 to 41 · e5bd5d16
  Graham McVicker authored 21 years ago
  
  e5bd5d16
Jul 21, 2003
- Removed some superflous tests to make runtests.pl happier. · 5d4b2d14
  Glenn Proctor authored 21 years ago
  
  5d4b2d14
Jul 18, 2003
- added transcript_id to EMBL/GenBank mrna tags · bcc972b5
  Graham McVicker authored 21 years ago
  
  bcc972b5
Jul 17, 2003
- changed GoXref implementation to allow for multiple evidence tags · de00f7df
  Graham McVicker authored 21 years ago
  
  de00f7df
- changed test count from 42 to 44 · f792996a
  Graham McVicker authored 21 years ago
  
  f792996a