Commits · e66cfc9eaaaee2249059c649c00b3832d56dad84 · ensembl-gh-mirror / ensembl

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Dec 06, 2001
- continued, not running yet, probably not compiling. · e66cfc9e
  Arne Stabenau authored 23 years ago
  
  e66cfc9e
- chr_name -> chromsome_id · fa1c7d0d
  James Gilbert authored 23 years ago
  
  fa1c7d0d
- just added in branch 121 · f5cd3dfb
  Eduardo Eyras authored 23 years ago
  
  f5cd3dfb
- obj -> dbadaptor · 53efd352
  Simon Potter authored 23 years ago
  
  53efd352
Dec 05, 2001
- just some attribute functions, now serious functionality yet. · 836c4f35
  Arne Stabenau authored 23 years ago
  
  836c4f35
- Just making sure that get_all_Genes_exononly method returns list of genes with no redundant exons · b5266609
  Abel Ureta-Vidal authored 23 years ago
  
  b5266609
- check for clones containing '.' · ccf1a79a
  Simon Potter authored 23 years ago
```
(just to pacify the web team :-P)
```
  ccf1a79a
Dec 04, 2001
- added exon_count and transcript_count · 3dc0ccbe
  Arne Stabenau authored 23 years ago
  
  3dc0ccbe
- restoring from fasle delete. · dd09948c
  Arne Stabenau authored 23 years ago
  
  dd09948c
- typo · ec1a14e3
  Simon Potter authored 23 years ago
  
  ec1a14e3
- updated to new schema · f79c0b3a
  Simon Potter authored 23 years ago
  
  f79c0b3a
- First stab at moving CloneAdaptor to new schema · 941299e8
  James Gilbert authored 23 years ago
  
  941299e8
- Remove PerlDB from Ensembl...Cruft. · 0579e5e5
  Arne Stabenau authored 23 years ago
  
  0579e5e5
- Obj removed! whey hey! · 14a55125
  Ewan Birney authored 23 years ago
  
  14a55125
- removed out of date modules · 7c701c98
  Ewan Birney authored 23 years ago
  
  7c701c98
- We need a RawContig objet to play with RawContigAdaptor. · 0b2c31b5
  Arne Stabenau authored 23 years ago
```
just a placeholder, James wants to implement it.
```
  0b2c31b5
- Started to implement RawContigAdaptor with some sql. · 504ec60f
  Arne Stabenau authored 23 years ago
  
  504ec60f
- removed cruft · a3951747
  Arne Stabenau authored 23 years ago
  
  a3951747
- removed cruft. · 7ce0f39c
  Arne Stabenau authored 23 years ago
  
  7ce0f39c
- removed chromosome_id form contig. · 15c43c8e
  Arne Stabenau authored 23 years ago
  
  15c43c8e
- Named all percentage identity columns to perc_ident and made them FLOAT · d240616d
  James Gilbert authored 23 years ago
  
  d240616d
- Removed some cruft · b59ec4cb
  Emmanuel Mongin authored 23 years ago
  
  b59ec4cb
Dec 03, 2001
- Added a new method to retrieve a family object for a given peptide · 547c0613
  Emmanuel Mongin authored 23 years ago
  
  547c0613
- Added a function for drosophila to get FlyBase gene names into the mapping · e6532b15
  Emmanuel Mongin authored 23 years ago
  
  e6532b15
- Simple Feature adaptor - basic framework for new arne-style feature adaptors · b7f2701e
  Ewan Birney authored 23 years ago
  
  b7f2701e
- new methods + few rearrangements · 0f99b568
  Eduardo Eyras authored 23 years ago
  
  0f99b568
- Various fixes for DAS and back-ported fixes from branch · 8a6b0d2f
  Web Admin authored 23 years ago
  
  8a6b0d2f
Nov 30, 2001
- my last cvs add ! · c8f3221e
  Philip Lijnzaad authored 23 years ago
```
Little convenience script to dump all or nearly ensembl databases by
chromosome, using dump_by_chr.pl.
```
  c8f3221e
- all indexes there again ... · 6b9e81e6
  Philip Lijnzaad authored 23 years ago
  
  6b9e81e6
- workarounds appear to work (i.e. running with -check is ok) · 3d00e415
  Philip Lijnzaad authored 23 years ago
  
  3d00e415
Nov 29, 2001
- Altered sql in get_all_PredictionFeatures to get results from fgenesh aswell as genscan · 7dddb92e
  Laura Clarke authored 23 years ago
  
  7dddb92e
- Altered SQL in get_all_PredictionFeatures so will return predictions by fgenesh aswell as genscan · 3570fb25
  Laura Clarke authored 23 years ago
  
  3570fb25
- removed 'chr' from chromosome name · 05c6e6c0
  Simon Potter authored 23 years ago
  
  05c6e6c0
- config file for GeneComparison already added in branch-121 · 10917a42
  Eduardo Eyras authored 23 years ago
  
  10917a42
- run-script for GeneComparison already added in branch-121 · 6bfd8b1f
  Eduardo Eyras authored 23 years ago
  
  6bfd8b1f
Nov 28, 2001
- added (still failing) fix for protein_feature(translation) string->int · 4b5bc74c
  Philip Lijnzaad authored 23 years ago
```
conversion workaround.
```
  4b5bc74c
- Fix method names in examples · 95820ca9
  James Gilbert authored 23 years ago
  
  95820ca9
- separated tmp_db creation from the table(s) it creates. Untested. · 4d382798
  Philip Lijnzaad authored 23 years ago
  
  4d382798
- removed a stupid nasty bug... · f889e43f
  Emmanuel Mongin authored 23 years ago
  
  f889e43f
Nov 27, 2001
- same changes as in branch 121 · a0cde95e
  Eduardo Eyras authored 23 years ago
  
  a0cde95e