Commits · e6f80908db5b4f1fc8312735ec213170412c3938 · ensembl-gh-mirror / ensembl

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Mar 05, 2003
- coding_start/end => coding_region_start/end · e6f80908
  Graham McVicker authored 22 years ago
  
  e6f80908
- added coding_start/end disclaimer · 37fc092f
  Graham McVicker authored 22 years ago
  
  37fc092f
- · eea79a8d
  Laura Clarke authored 22 years ago
```
added a little more info to the no default assembly error message
```
  eea79a8d
- · d6e1d9bc
  Laura Clarke authored 22 years ago
```
changed display_label method
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  d6e1d9bc
Mar 04, 2003
- *** empty log message *** · e1314203
  Emmanuel Mongin authored 22 years ago
  
  e1314203
- better PODs · 4a0ee8e1
  Graham McVicker authored 22 years ago
  
  4a0ee8e1
- added method get_base_count · 0b1ec66f
  Graham McVicker authored 22 years ago
  
  0b1ec66f
- added test for get_base_count · cf507e1c
  Graham McVicker authored 22 years ago
  
  cf507e1c
- script to munge columns in dumps of tables where column order differs · 5fbcf7f9
  Simon Potter authored 22 years ago
  
  5fbcf7f9
Mar 03, 2003
- added method get_base_count · c42a41ea
  Graham McVicker authored 22 years ago
  
  c42a41ea
- added test for Slice::get_base_count · 7716a16a
  Graham McVicker authored 22 years ago
  
  7716a16a
Mar 02, 2003
- Utility scripts to get diff nuc acid freq · 9579dd89
  Emmanuel Mongin authored 22 years ago
  
  9579dd89
- update on the genebank submission dumping script · 3917fcf7
  Emmanuel Mongin authored 22 years ago
  
  3917fcf7
Feb 28, 2003
- fixed mapfrags · edd5b698
  Web Admin authored 22 years ago
  
  edd5b698
- made output syntax stricter, artemis happy now · b9e67536
  Graham McVicker authored 22 years ago
  
  b9e67536
- avoid a perl warning · 995e27be
  Graham McVicker authored 22 years ago
  
  995e27be
- typo · 487ab603
  Graham McVicker authored 22 years ago
  
  487ab603
- minor changes to keep BioJava parser happy · 1090cdf8
  Graham McVicker authored 22 years ago
  
  1090cdf8
Feb 27, 2003
- removed hacky embl dumping modules · 68602efb
  Graham McVicker authored 22 years ago
  
  68602efb
- replacement for hacky SliceWrapper, EMBL_Dump, TranscriptWrapper and Misc modules · 7a535dc5
  Graham McVicker authored 22 years ago
  
  7a535dc5
- utility script to dump ssubmission to genbank from Ensembl. still needs tweacks. · 1bc30b08
  Emmanuel Mongin authored 22 years ago
  
  1bc30b08
Feb 25, 2003
- New crash protection so that when an EST turns out to be nothing but a polyA... · 34f1ea86
  Dan T Andrews authored 22 years ago
```
New crash protection so that when an EST turns out to be nothing but a polyA tail we dont try to create a Seq object with a zero length sequence.
```
  34f1ea86
- XXXXXXXXXXXXXXXXXXXXXXXXXX · fed33645
  Web Admin authored 22 years ago
  
  fed33645
- XXXXXXXXXXXXXXXXXXXXXXXXXX · 712cfb5e
  Web Admin authored 22 years ago
  
  712cfb5e
- removed use of symbolic references which were creating problems on some versions of perl · 5687a3df
  Graham McVicker authored 22 years ago
```
also removed a couple of useless methods
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  5687a3df
- removed tests for RawContigAdaptor::get_contig_id_by_id and RawContigAdaptor::get_internal_id_by_id · a7938a10
  Graham McVicker authored 22 years ago
  
  a7938a10
Feb 24, 2003
- attach slice to repeat_features · 252e1bed
  Graham McVicker authored 22 years ago
  
  252e1bed
Feb 21, 2003
- update gene tests · 58f36f55
  Graham McVicker authored 22 years ago
  
  58f36f55
- fix type · f3c3f833
  Graham McVicker authored 22 years ago
  
  f3c3f833
- some cleanup to the script, nice usage statement .. · 95dae9f7
  Arne Stabenau authored 22 years ago
  
  95dae9f7
- ups wrong directory ... · dea54850
  Arne Stabenau authored 22 years ago
  
  dea54850
- A useful script to apply the same sql statement to multiple databases · 1274ce4a
  Arne Stabenau authored 22 years ago
  
  1274ce4a
- I cannot believe nobody used *#%$@! strict in this module · dd1948e7
  Graham McVicker authored 22 years ago
  
  dd1948e7
Feb 20, 2003
- changed is known to work the same way in Gene and Transcript and to see any... · 4f58a813
  Web Admin authored 22 years ago
```
changed is known to work the same way in Gene and Transcript and to see any status containing "KNOWN" as known rather than just KNOWN, e.g. "KNOWNXREF"
```
  4f58a813
- added ENUM in ext_db status column (ORTH) · 1f7b9c81
  Emmanuel Mongin authored 22 years ago
  
  1f7b9c81
- removed left joins, fixed SQL typo · b52b0c0a
  Graham McVicker authored 22 years ago
  
  b52b0c0a
- added id_ano column to lite query · 989a7c11
  Graham McVicker authored 22 years ago
  
  989a7c11
Feb 19, 2003
- enabled gene retrieval by analysis type, deprecated/removed lame 'source' calls · b4427c77
  Graham McVicker authored 22 years ago
  
  b4427c77
- added Synteny adaptor to Slice · b06d20b7
  Web Admin authored 22 years ago
  
  b06d20b7
Feb 18, 2003
- updated chromosome adaptors to use new lite Chr schema · 94ff69bb
  Web Admin authored 22 years ago
  
  94ff69bb