Commits · e815acb48f53ff08d2b5e42889c64d2b2359b774 · ensembl-gh-mirror / ensembl

This project is mirrored from https://:*****@github.com/Ensembl/ensembl.git. Pull mirroring failed 2 months ago.
Repository mirroring has been paused due to too many failed attempts. It can be resumed by a project maintainer or owner.
Last successful update 6 months ago.

Jun 09, 2006
- some fixes for multi-version support · e815acb4
  Patrick Meidl authored 18 years ago
  
  e815acb4
- another try to fix a bug in the overlap filter · 5521bc2f
  Patrick Meidl authored 18 years ago
  
  5521bc2f
Jun 08, 2006
- first exon phase fix · 2e0f66a4
  Web Admin authored 18 years ago
  
  2e0f66a4
- Remove old (and hopefully unused) things I don't want to be associated · f7b98632
  Andreas Kusalananda Kähäri authored 18 years ago
```
with anymore.
```
  f7b98632
- new data and tests for multiple gene/transcript/exon versions · 8d269d3a
  Patrick Meidl authored 18 years ago
  
  8d269d3a
- misleading comment on last commit: should be 'support for multiple versions of... · 9ed995b0
  Patrick Meidl authored 18 years ago
```
misleading comment on last commit: should be 'support for multiple versions of genes/transcripts/exons in a single database'
```
  9ed995b0
- support for multiple versions of genes/transcripts/exons in a single database · 550454d6
  Patrick Meidl authored 18 years ago
  
  550454d6
- fixed sql bug in fetch_by_transcript_archive_id() · b66689ef
  Patrick Meidl authored 18 years ago
  
  b66689ef
- better pod · 8bf5bb43
  Patrick Meidl authored 18 years ago
  
  8bf5bb43
- Now consider linkate types when comparing existing GO xrefs. · d6673b11
  Glenn Proctor authored 18 years ago
  
  d6673b11
- bug fixes · f003122c
  Patrick Meidl authored 18 years ago
  
  f003122c
Jun 07, 2006
- patch to add stable_id_event.score column. · a5de449a
  Craig Melsopp authored 18 years ago
  
  a5de449a
- Added stable_id_event -> mapping_session link. · 03544354
  Glenn Proctor authored 18 years ago
  
  03544354
- *** empty log message *** · 71c571f0
  Glenn Proctor authored 18 years ago
  
  71c571f0
- Support -delete_downloaded and -download_path options. · b9fb3d60
  Glenn Proctor authored 18 years ago
  
  b9fb3d60
Jun 06, 2006
- Add fix for versions that contain the NULL string. · 92d42bb0
  Glenn Proctor authored 18 years ago
  
  92d42bb0
- Added display of statistics by evidence type · 0041cff5
  Glenn Proctor authored 18 years ago
  
  0041cff5
Jun 02, 2006
- Rationalised all primary and foreign keys to be INT(10) UNSIGNED. · 8e14ea7d
  Glenn Proctor authored 18 years ago
```
Added info_type and info_text to UNIQUE index on xref.

Changed version column in xref to default to NULL.
```
  8e14ea7d
- Foreign key definitions for Ensembl schema. Needs InnoDB tables. · f7516627
  Glenn Proctor authored 18 years ago
  
  f7516627
- Change version column in xref to be default 0, not null. · 78534d2c
  Glenn Proctor authored 18 years ago
  
  78534d2c
- Add info_type and info_text to UNIQUE constraint in xref. · 9a73f2f2
  Glenn Proctor authored 18 years ago
  
  9a73f2f2
- Rationalise all primary and foreign keys to be of type INT(10) unsigned. · 3c4023a4
  Glenn Proctor authored 18 years ago
  
  3c4023a4
- Add info_type and info_text to check for existing xrefs. · 2a132341
  Glenn Proctor authored 18 years ago
  
  2a132341
- Fixed query fields out of sync in fetch_by_db_accession and fetch_all_by_description · b18c181e
  Anne Parker authored 18 years ago
  
  b18c181e
Jun 01, 2006
- changed note=pseudogene to note= the actual biptype fro none tranlatable transcripts · f7898626
  Ian Longden authored 18 years ago
  
  f7898626
- added sub fetch_all_by_description · 79fe8420
  Ian Longden authored 18 years ago
  
  79fe8420
- Bug fix: wasn't deleting projected entries from go_xref. · 24c1cb21
  Glenn Proctor authored 18 years ago
```
Also removed obselte delete statements dealing with previous way of labelling projected terms (%[from%).
```
  24c1cb21
May 31, 2006
- Updated version in meta · 3b7a1d31
  Glenn Proctor authored 18 years ago
  
  3b7a1d31
May 30, 2006
- added end_phase to key for exon hash, to stop overwriting of valid exons. · 805de831
  Ian Longden authored 18 years ago
  
  805de831
- MIM fixed by using long info file only. · d3ebb6f8
  Ian Longden authored 18 years ago
  
  d3ebb6f8
- just dump genes of biotype 'protein_coding' or 'pseudogene' · c2d69198
  Ian Longden authored 18 years ago
  
  c2d69198
May 26, 2006
- Added Medaka. · b362259e
  Bronwen Aken authored 18 years ago
  
  b362259e
May 25, 2006
- add dumpcheck to help · 38abdd91
  Ian Longden authored 18 years ago
  
  38abdd91
- add morbid to gene maps aswell as they belong to both · 9dd895d6
  Ian Longden authored 18 years ago
  
  9dd895d6
- removed MIM as there is no way to know if these are morbid or gene maps. · 7d84bbf8
  Ian Longden authored 18 years ago
  
  7d84bbf8
- MIM and GO changes · 56079e5d
  Ian Longden authored 18 years ago
  
  56079e5d
- names changes for MIM · 5a3007d5
  Ian Longden authored 18 years ago
  
  5a3007d5
- added example script for using mapping between two assemblies · 43231908
  Patrick Meidl authored 18 years ago
  
  43231908
- Updated the attrib_codes for Mt_tRNA and Mt_rRNA · d73ef122
  Abel Ureta-Vidal authored 18 years ago
  
  d73ef122
May 24, 2006
- Added cdna and otherfeatures to list of database types. · 489677dc
  Glenn Proctor authored 18 years ago
  
  489677dc