Commits · ee9ea8374693f5f9be7c597aee82ead3aebc8e6e · ensembl-gh-mirror / ensembl

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Jan 15, 2004
- fixed test · ee9ea837
  Graham McVicker authored 21 years ago
  
  ee9ea837
- turned off verbosity · 0f22c40b
  Graham McVicker authored 21 years ago
  
  0f22c40b
- fixed test · afea057b
  Graham McVicker authored 21 years ago
  
  afea057b
Jan 14, 2004
- modified call to genomic2cdna in get_all_cdna_SNPs b/c slice arg should no longer be necessary · d1430a51
  Graham McVicker authored 21 years ago
  
  d1430a51
- copy the name and type of the mapfrags which are converted to misc_features · 65fdbccf
  Graham McVicker authored 21 years ago
  
  65fdbccf
- perform fuzzy matching of seq_region versions if no exact matching seq_region is found · 47ff4b54
  Graham McVicker authored 21 years ago
  
  47ff4b54
- added tests for fuzzy-matching of seq_region versions · 6b51d267
  Graham McVicker authored 21 years ago
  
  6b51d267
- Updated it not to use anymore /tmp for temporary copy and knows now about the... · fbd6245d
  Abel Ureta-Vidal authored 21 years ago
```
Updated it not to use anymore /tmp for temporary copy and knows now about the mysql new directory configuration standards
```
  fbd6245d
- made some caches larger, and made caching in fetch_all more intelligent · a6b0996d
  Graham McVicker authored 21 years ago
  
  a6b0996d
- Now works with ecs4 nodes and need port number in the input file · d62e480d
  Abel Ureta-Vidal authored 21 years ago
  
  d62e480d
Jan 13, 2004
- remove extra length function · 46f4b01d
  Web Admin authored 21 years ago
  
  46f4b01d
- changes and new tests for new slice attribute seq_region_length · 118cc245
  Graham McVicker authored 21 years ago
  
  118cc245
- turned off verbosity · 69d290df
  Graham McVicker authored 21 years ago
  
  69d290df
- give more detail when warning · 78db673a
  Graham McVicker authored 21 years ago
  
  78db673a
- Changes so seq_region_length is set when creating slices · 71d0bfd5
  Graham McVicker authored 21 years ago
  
  71d0bfd5
- Added seq_region_length attribute · 40145c7d
  Graham McVicker authored 21 years ago
  
  40145c7d
- return empty list instead of throwing in get_all_translateable_Exons when there is no Translation · a5d38a9b
  Graham McVicker authored 21 years ago
  
  a5d38a9b
- changed POD to reflect new seq_region_length attrib · 55098c4f
  Graham McVicker authored 21 years ago
  
  55098c4f
- add some calc stuff · 9d3d3eaa
  Web Admin authored 21 years ago
  
  9d3d3eaa
- testing · 28e8a60d
  Web Admin authored 21 years ago
  
  28e8a60d
- use CORE::length instead of length just to be safe · 0b10a7a3
  Graham McVicker authored 21 years ago
  
  0b10a7a3
Jan 12, 2004
- avoid a perl warning · 1d750c76
  Graham McVicker authored 21 years ago
  
  1d750c76
- avoid a couple of warnings · 55af15f8
  Graham McVicker authored 21 years ago
  
  55af15f8
- disabled the modification of Briggsae chromosome names. For now they keep the cbr25. prefix · 800d0695
  Graham McVicker authored 21 years ago
  
  800d0695
- added option for database port · cfb40b5c
  Graham McVicker authored 21 years ago
  
  cfb40b5c
- changed check for ProxyGeneAdaptor · 4e556996
  Graham McVicker authored 21 years ago
  
  4e556996
- Disabled ProxyGene adaptor for now · 62c7422f
  Graham McVicker authored 21 years ago
  
  62c7422f
- added seq() and length() methods · 29a1af03
  Graham McVicker authored 21 years ago
  
  29a1af03
- added tests for length() and seq() methods added to Translation · d21bfe3e
  Graham McVicker authored 21 years ago
  
  d21bfe3e
- reverted to version 1.23, which was accidentally clobbered during merge · 488e35d5
  Graham McVicker authored 21 years ago
  
  488e35d5
- new affy chips · 34d3868d
  Damian Keefe authored 21 years ago
  
  34d3868d
- reenabled the standard mapper for contig-chromosome mappings · 0a661260
  Arne Stabenau authored 21 years ago
  
  0a661260
- · eeb3f21e
  Laura Clarke authored 21 years ago
```
small bug fix, should use transcript_id no translation_id in fetch_by_translation_id when fetching
transcript object
```
  eeb3f21e
- · 4735a9ff
  Laura Clarke authored 21 years ago
```
some changes from old api which needed introducing here
```
  4735a9ff
- · fd349131
  Laura Clarke authored 21 years ago
```
some changes from the old api which needed introducing here
```
  fd349131
- removed out of date doc · 822ae61e
  Graham McVicker authored 21 years ago
  
  822ae61e
- more old script removal · 17855f01
  Graham McVicker authored 21 years ago
  
  17855f01
- removed very old script · faebf5ff
  Graham McVicker authored 21 years ago
  
  faebf5ff
Jan 09, 2004
- removed obsolete textview thing · e20cb5fe
  Graham McVicker authored 21 years ago
  
  e20cb5fe
- removed old perl ID mapping (v. 2) scripts · 46edfe0b
  Graham McVicker authored 21 years ago
  
  46edfe0b