Commits · f2ef3272710f3b1017c2751c3480441d8ba8ffac · ensembl-gh-mirror / ensembl

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Jan 18, 2016
- use custom-specified otherf database correctly · f2ef3272
  Magali Ruffier authored 9 years ago
  
  f2ef3272
Jan 15, 2016
- script needed for ccds mappings · 1d32e405
  Magali Ruffier authored 9 years ago
  
  1d32e405
- do not commit populate_metadata file · 73dfd61c
  Magali Ruffier authored 9 years ago
  
  73dfd61c
- file is generated by xref_config2sql script · 91025e56
  Magali Ruffier authored 9 years ago
  
  91025e56
Jan 12, 2016
- Merge pull request #111 from khowe/master · 90692873
  Alessandro Vullo authored 9 years ago
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Looks ok to me, thanks
```
  90692873
- Updated copyright to 2016 · 228fcff4
  Kevin Howe authored 9 years ago
  
  228fcff4
- New mapping parameters for WormBase/ParaSite mapping · 1947aad4
  Kevin Howe authored 9 years ago
  
  1947aad4
- Merge pull request #110 from Ensembl/ENSCORESW-1633 · 4221672b
  Alessandro Vullo authored 9 years ago
```
Allow a seq_region_name of 0 to be returned from Slice, and do a litt…
```
  4221672b
Jan 11, 2016
- Correct schema version. · 284651e9
  Alessandro Vullo authored 9 years ago
  
  284651e9
- 0 == undef, change the extra safety test to compare against an empty string... · 3c53ce43
  Matthew Laird authored 9 years ago
  
  3c53ce43
- Allow a seq_region_name of 0 to be returned from Slice, and do a little test... · 2f7451bf
  Matthew Laird authored 9 years ago
```
Allow a seq_region_name of 0 to be returned from Slice, and do a little test to ensure we can create a Slice with name 0.
```
  2f7451bf
Jan 08, 2016
- ENSCORESW-1557 : use versioned stable id for sequence dumps · 739ade94
  Magali Ruffier authored 9 years ago
  
  739ade94
- Merge pull request #109 from Ensembl/ENSCORESW-1381 · 7ca43678
  Magali Ruffier authored 9 years ago
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Jira ENSCORESW-1381
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  7ca43678
Jan 07, 2016
- Merge remote-tracking branch 'origin/master' · be0f2084
  Andy Yates authored 9 years ago
  
  be0f2084
- Slack team name has changed. Travis needs updating · aa4c2b68
  Andy Yates authored 9 years ago
  
  aa4c2b68
Jan 05, 2016
- new RGD ftp url · 3b746060
  Magali Ruffier authored 9 years ago
  
  3b746060
Jan 04, 2016
- Update CONTRIBUTING.md · 872f0024
  Magali Ruffier authored 9 years ago
  
  872f0024
- annual copyright update · 7de96eee
  Magali Ruffier authored 9 years ago
  
  7de96eee
Dec 18, 2015
- Type in test. · 62a3758a
  Matthew Laird authored 9 years ago
  
  62a3758a
Dec 15, 2015
- using correct grammar · 7d314416
  Magali Ruffier authored 9 years ago
  
  7d314416
Dec 14, 2015
- remove empty data files · 6652a1c5
  Magali Ruffier authored 9 years ago
  
  6652a1c5
- ENSCORESW-1621 : unified table.sql file for core dbs · b7331edd
  Magali Ruffier authored 9 years ago
  
  b7331edd
Dec 11, 2015
- ENSCORESW-1596 : longer synonym column · 34f5699b
  Magali Ruffier authored 9 years ago
  
  34f5699b
- Merge pull request #105 from Ensembl/ENSCORESW-1381 · c7c63865
  Magali Ruffier authored 9 years ago
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Enscoresw 1381
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  c7c63865
- Merge pull request #104 from ckongEbi/master · 1183566c
  Magali Ruffier authored 9 years ago
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To use dbprimary_acc instead of display_id;Fix GO source duplication
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  1183566c
- Merge branch 'master' of https://github.com/Ensembl/ensembl · c6dd98be
  Magali Ruffier authored 9 years ago
  
  c6dd98be
Dec 08, 2015

Jira · 34be9763

Matthew Laird authored 9 years ago

stable_id_version setter/getter for core object types, sets stable_id with a . delimited version or fetches stable_id with .version concatonated (if version is set)

34be9763

Dec 04, 2015
- Merge pull request #108 from nicklangridge/nicklangridge-patch-2 · 1c1d66f6
  Magali Ruffier authored 9 years ago
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Check that adaptor exists before trying to use dbc
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  1c1d66f6
- Check that adaptor exists before trying to use dbc · 3cfb9269
  Nick Langridge authored 9 years ago
  
  3cfb9269
- Merge pull request #107 from nicklangridge/nicklangridge-patch-1 · bca12541
  Magali Ruffier authored 9 years ago
```
Check that adaptor exists before trying to use dbc
```
  bca12541
- Merge pull request #106 from Ensembl/bugfix/externaldbname · 0fbc0a35
  Alessandro Vullo authored 9 years ago
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Bugfix/externaldbname
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  0fbc0a35
- Check that adaptor exists before trying to use dbc · 2e466009
  Nick Langridge authored 9 years ago
  
  2e466009
Dec 03, 2015
- To use infor from provider meta key to update annotation source · 005f2dee
  ChuangKee Ong authored 9 years ago
  
  005f2dee
- Merge remote branch 'upstream/master' · 6a32827f
  ChuangKee Ong authored 9 years ago
  
  6a32827f
Dec 02, 2015
- Merge pull request #103 from ens-ma7/ens-ma7-patch-1 · 26abd369
  Magali Ruffier authored 9 years ago
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Do not gzip checksum
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  26abd369
- Jira ENSCORESW-1381 · a9ac8581
  Matthew Laird authored 9 years ago
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- Added fetch_by_stable_id_version to TranslationAdaptor for consistency
- Related tests for new function
```
  a9ac8581
- ENSCORESW-1349 : return slice if no offset · a7aab0be
  Magali Ruffier authored 9 years ago
  
  a7aab0be
- patch test databases for 84 · 3c42736d
  Magali Ruffier authored 9 years ago
  
  3c42736d
- update for release 84 · df58aad7
  Magali Ruffier authored 9 years ago
  
  df58aad7
- ENSCORESW-1570 : only store unique alignments · 1452c722
  Magali Ruffier authored 9 years ago
  
  1452c722