Commits · fbb0ee9fc9b62f03d0aa0e3b4d333f16e6e10def · ensembl-gh-mirror / ensembl

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Apr 08, 2005
- connection dropped fix by using dbadaptors etc which has already checks connections etc. · fbb0ee9f
  Ian Longden authored 19 years ago
  
  fbb0ee9f
- commented out locuslink and OMIM as these are not used now. Removed Wormbase... · 14f8ef97
  Ian Longden authored 19 years ago
```
commented out locuslink and OMIM as these are not used now. Removed Wormbase and used wormpep_id instead as this will not confilct with the external_db defined values
```
  14f8ef97
- Added RefSeq_dna_predicted & RefSeq_peptide_predicted · 0e9630d4
  Glenn Proctor authored 19 years ago
  
  0e9630d4
- Fixed typo · 66603ea3
  Glenn Proctor authored 19 years ago
  
  66603ea3
- Added RefSeq_peptide_predicted and RefSeq_dna_predicted (as type 'PRED') to... · e73cf0f7
  Glenn Proctor authored 19 years ago
```
Added RefSeq_peptide_predicted and RefSeq_dna_predicted (as type 'PRED') to distinguish predictions from KNOWN RefSeq entries.
```
  e73cf0f7
Apr 06, 2005
- reconnect before parsing. · c486a480
  Ian Longden authored 19 years ago
  
  c486a480
- Dump all xrefs not just human/mouse · 88191c9d
  Ian Longden authored 19 years ago
  
  88191c9d
- Comment out deletion of motifs · aab7a5f3
  Glenn Proctor authored 19 years ago
  
  aab7a5f3
- Allow specification of motif ID · 6885385c
  Glenn Proctor authored 19 years ago
  
  6885385c
Apr 04, 2005
- Script to load regulatory feature data (e.g. micro-RNA) into core db. · 9623b6e0
  Glenn Proctor authored 20 years ago
  
  9623b6e0
- honeybee and seasquirt initial data added · e5b841b7
  Ian Longden authored 20 years ago
  
  e5b841b7
- Added searching for unlinked transcripts to deal with alternaltive UTRs in elegans. · efe1fee8
  Glenn Proctor authored 20 years ago
  
  efe1fee8
- Simplified since we're now using direct xrefs for elegans rather than mapping. · d9d39b5e
  Glenn Proctor authored 20 years ago
  
  d9d39b5e
- *** empty log message *** · ff515ef8
  Glenn Proctor authored 20 years ago
  
  ff515ef8
Apr 01, 2005
- Refactoring to allow easier overriding of gene & transcript display_xref setting in subclasses. · 92a229b9
  Glenn Proctor authored 20 years ago
```
Added "search" for UTR transcripts when generating xref links.
```
  92a229b9
- Added elegans-specific gene & transcript display_xref setting. · 3ab99939
  Glenn Proctor authored 20 years ago
  
  3ab99939
- Created; create xrefs & direct_xrefs from stable IDs for WormBase-imported... · 43687763
  Glenn Proctor authored 20 years ago
```
Created; create xrefs & direct_xrefs from stable IDs for WormBase-imported genomes (e.g. elegans). Subclass of DatabaseParser.pm
```
  43687763
- Created; base class for parsers that connect to databases. · 28a00b37
  Glenn Proctor authored 20 years ago
  
  28a00b37
- Added source for elegans that uses WormbaseDatabseStableIDParser. · 6544e72d
  Glenn Proctor authored 20 years ago
  
  6544e72d
- Added support for parsing from databases (rather than files). · 4573a115
  Glenn Proctor authored 20 years ago
  
  4573a115
- *** empty log message *** · fcf39ea9
  Glenn Proctor authored 20 years ago
  
  fcf39ea9
- Typo. · 7879f0e8
  Glenn Proctor authored 20 years ago
  
  7879f0e8
Mar 31, 2005
- Removed wormbase info as this will now be obtained only from the wormbase file · ce5aa54a
  Ian Longden authored 20 years ago
  
  ce5aa54a
Mar 30, 2005
- added WormPepParser docs · 94077fdd
  Ian Longden authored 20 years ago
  
  94077fdd
Mar 29, 2005
- use correct source or web will not recognise it · 5c7874c1
  Ian Longden authored 20 years ago
  
  5c7874c1
- reworked to work correctly · d5b9c845
  Ian Longden authored 20 years ago
  
  d5b9c845
- add labels for wormpep · 95f6428a
  Ian Longden authored 20 years ago
  
  95f6428a
- add dependent xref if worm transcript not found and swissprot is given · 6c49467b
  Ian Longden authored 20 years ago
  
  6c49467b
- Cannot parse files with 17 million bases, so removed these huge files · 341f3fe6
  Ian Longden authored 20 years ago
  
  341f3fe6
- tidy up · 9d6ca20c
  Ian Longden authored 20 years ago
  
  9d6ca20c
- case sensetivity issue fixed · 55d4ecc3
  Ian Longden authored 20 years ago
  
  55d4ecc3
Mar 24, 2005
- wormBase stuff added · f27e3298
  Ian Longden authored 20 years ago
  
  f27e3298
- Work still needed on WormPepParser to add if not found and has a swissprot acc. · 112ed948
  Ian Longden authored 20 years ago
  
  112ed948
- wormpep file added. Aswell as other RefSeq entries split into seperate loads · 44dfa0cc
  Ian Longden authored 20 years ago
  
  44dfa0cc
Mar 22, 2005
- sources for the worm · 4c9f730b
  Felix Kokocinski authored 20 years ago
  
  4c9f730b
Mar 21, 2005
- one comma too much... · a9d36a01
  Felix Kokocinski authored 20 years ago
  
  a9d36a01
Mar 18, 2005
- added missing codes, needs cleanup now · f7cad0d1
  Arne Stabenau authored 20 years ago
  
  f7cad0d1
- debugged and tested · ade933cd
  Arne Stabenau authored 20 years ago
  
  ade933cd
- added new sources and removed medline references · a60c15ae
  Ian Longden authored 20 years ago
  
  a60c15ae
- removed medline as this is the same as pubmed · 5f23d5b0
  Ian Longden authored 20 years ago
  
  5f23d5b0