Commits · fc27c1a596d0c0f50643f00054857e0b6d77d456 · ensembl-gh-mirror / ensembl

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Mar 01, 2004
- adapt the test to new Attribute API · fc27c1a5
  Arne Stabenau authored 21 years ago
  
  fc27c1a5
- bug fix · 84050f6e
  Arne Stabenau authored 21 years ago
  
  84050f6e
- added forgotten "use" of rearrange method · 8e011446
  Graham McVicker authored 21 years ago
  
  8e011446
- fixed typo in test · e106c96d
  Graham McVicker authored 21 years ago
  
  e106c96d
- renamed desc attribute to description to be more consistant with DB and MiscSet module · 3c8eae8f
  Graham McVicker authored 21 years ago
  
  3c8eae8f
- changed constructor to take named arguments · 4083c871
  Graham McVicker authored 21 years ago
  
  4083c871
- added store methods · 25abadb2
  Graham McVicker authored 21 years ago
  
  25abadb2
- small changes in API related to Attributes · bee31908
  Arne Stabenau authored 21 years ago
  
  bee31908
- added get_AttributeAdaptor method · b3ec19cd
  Graham McVicker authored 21 years ago
  
  b3ec19cd
- finished AttributeAdaptor implementation · ea37ea6f
  Graham McVicker authored 21 years ago
  
  ea37ea6f
- corrected test count · 57bffab9
  Graham McVicker authored 21 years ago
  
  57bffab9
- added tests for new AttributeAdaptor · b2d50053
  Graham McVicker authored 21 years ago
  
  b2d50053
- updated POD · 16231d85
  Graham McVicker authored 21 years ago
  
  16231d85
- removed restrict_between_positions method, confusing and apparently never used · be4ca9d3
  Graham McVicker authored 21 years ago
  
  be4ca9d3
Feb 28, 2004
- fixed a couple more deletion bugs, took out some debug prints, added a couple of status codes · c109b883
  Graham McVicker authored 21 years ago
  
  c109b883
- fixed a couple of bugs in deletion processing code · f18197d2
  Graham McVicker authored 21 years ago
  
  f18197d2
Feb 27, 2004
- more work on AttributeAdaptor, still incomplete · cc91660c
  Graham McVicker authored 21 years ago
  
  cc91660c
- Created new Bio::EnsEMBL::Attribute class · 227ae696
  Graham McVicker authored 21 years ago
  
  227ae696
- added tests for Attribute class · 2edcd70f
  Graham McVicker authored 21 years ago
  
  2edcd70f
- initial AttributeAdaptor. Used by Slice and SliceAdaptor to store Attribute... · 6882d903
  Arne Stabenau authored 21 years ago
```
initial AttributeAdaptor. Used by Slice and SliceAdaptor to store Attribute objects. Used by MiscFeature and MiscFeatureAdaptor as well
```
  6882d903
- * made Slice::project more efficient by removing a fetch of entire slice (no... · c4f85ffc
  Graham McVicker authored 21 years ago
```
* made Slice::project more efficient by removing a fetch of entire slice (no longer needed b/c of seq_region_length attrib on slice)
* added use Bio::EnsEMBL::ProjectionSegment statement
```
  c4f85ffc
- script to calculate some stats on chromosomes (gene counts) · 7e6448ca
  Graham McVicker authored 21 years ago
  
  7e6448ca
- use mysql_info to find if insert ignore was successful · 8da6efcb
  Arne Stabenau authored 21 years ago
  
  8da6efcb
- made attrib_type.code case insensitive (uc() where used) · 3fc0e19c
  Arne Stabenau authored 21 years ago
  
  3fc0e19c
- test count updated · 1757496e
  Arne Stabenau authored 21 years ago
  
  1757496e
- added set/get_seq_region_attrib test · 70f9e4a5
  Arne Stabenau authored 21 years ago
  
  70f9e4a5
- added set_seq_region_attrib · a1bc05c7
  Arne Stabenau authored 21 years ago
  
  a1bc05c7
Feb 26, 2004
- fixed test count · c9d6aff6
  Graham McVicker authored 21 years ago
  
  c9d6aff6
- Some POD cleanup · bee84c07
  Graham McVicker authored 21 years ago
  
  bee84c07
- added fetch_by_db_accession method · b6142799
  Graham McVicker authored 21 years ago
  
  b6142799
- added tests for DBEntryAdaptor fetch_by_dbID and fetch_by_db_accession methods · 26443da4
  Graham McVicker authored 21 years ago
  
  26443da4
- Convenience object to access the return value of a projection · 650d7375
  Arne Stabenau authored 21 years ago
  
  650d7375
- patched project to give back ProjectionSegments · 5f3c8109
  Arne Stabenau authored 21 years ago
  
  5f3c8109
- added project return value check · d09271e3
  Arne Stabenau authored 21 years ago
  
  d09271e3
- updated by Graham · d94abf6c
  Web Admin authored 21 years ago
  
  d94abf6c
- changed some of the toplevel information, and corrected some mistakes found by ianl · 62d54e8a
  Graham McVicker authored 21 years ago
  
  62d54e8a
- added back in method alignment_length · 99b71ab3
  Jessica Severin authored 21 years ago
  
  99b71ab3
- update for sets · ad9f6b52
  Web Admin authored 21 years ago
  
  ad9f6b52
Feb 25, 2004
- warn if database has an invalid block size · b6b27a92
  Graham McVicker authored 21 years ago
  
  b6b27a92
- fixed so should now work with different coord systems (was broken before) · 872e210a
  Graham McVicker authored 21 years ago
  
  872e210a