Commits · fd415f3c553ea2aa04768a6f0d3f792033510c9a · ensembl-gh-mirror / ensembl

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Apr 25, 2005
- Bug fix: some transcript display_xrefs weren't being assigned correctly if the... · fd415f3c
  Glenn Proctor authored 20 years ago
  fd415f3c
- Store synonyms as well as primary xref accessions in get_valid_codes (needed... · cf34f244
  Glenn Proctor authored 20 years ago
  cf34f244
Apr 22, 2005
- Start object_xrefs at 1 if none found in target database. · ebd03582
  Glenn Proctor authored 20 years ago
  
  ebd03582
- Reflect the fact that delete_existing is now a separate method in BasicMapper.pm · a647d08d
  Glenn Proctor authored 20 years ago
  
  a647d08d
- Moved delete_existing to separate metod so it can be called at the start of... · 26aa4738
  Glenn Proctor authored 20 years ago
  26aa4738
Apr 21, 2005
- Removed gene_description. · 7b4c4ab5
  Glenn Proctor authored 20 years ago
  
  7b4c4ab5
- removed pubmed references and added predicted bits for refseq · b9e4c32d
  Ian Longden authored 20 years ago
  
  b9e4c32d
Apr 20, 2005
- Removed PUBMED. · 46e161ed
  Glenn Proctor authored 20 years ago
  
  46e161ed
- Speeded up synonym dumping. · 1d4e365f
  Glenn Proctor authored 20 years ago
  1d4e365f
- Fix the length of the RepeatConsensus when the sequence is like "xxx(N)" · d8fd649b
  Javier Herrero authored 20 years ago
  
  d8fd649b
Apr 19, 2005
- removed medline and locuslink as these are now ex-sources · 6fb0de65
  Ian Longden authored 20 years ago
  
  6fb0de65
- Removed hardcoded call to slice fetch_by_region to deal with species where... · 17d0f814
  Glenn Proctor authored 20 years ago
  17d0f814
- Compare assigned display xrefs between two databases, optionally by source. · 24b3b2b7
  Glenn Proctor authored 20 years ago
  
  24b3b2b7
Apr 18, 2005
- dump dependent xref synonyms · 7918612d
  Ian Longden authored 20 years ago
  
  7918612d
- added biotype, confidence and description · db9e81ca
  Arne Stabenau authored 20 years ago
  
  db9e81ca
- added biotype, source, confidence removed description as separate table · b3861b19
  Arne Stabenau authored 20 years ago
  
  b3861b19
- produce ordered results in sub _type_by_external_id · a90b9f0d
  Arne Stabenau authored 20 years ago
  
  a90b9f0d
- shouldnt eat input list, somwbody might want to use it (me!) · 33535f63
  Arne Stabenau authored 20 years ago
  
  33535f63
- new schema patch · e47331f2
  Arne Stabenau authored 20 years ago
  
  e47331f2
- new columns in gene,transcript. removed gene_description · 5e2da580
  Arne Stabenau authored 20 years ago
  
  5e2da580
- gene_description table testing removed, table doesnt exist any more · 3f599e6b
  Arne Stabenau authored 20 years ago
  
  3f599e6b
- type ensembl removed from test, is not allowed any more · 3b0b489b
  Arne Stabenau authored 20 years ago
  
  3b0b489b
- updated test count · bfad53cf
  Arne Stabenau authored 20 years ago
  
  bfad53cf
Apr 17, 2005
- add synonyms from the dead names column. NOTE still need to get the Mapper... · f438c03d
  Ian Longden authored 20 years ago
  f438c03d
- set flags to disconnect and reconnect either side of the mapping · 47b455cf
  Ian Longden authored 20 years ago
  
  47b455cf
Apr 15, 2005
- Fixed bug causing some display labels to not be set correctly. · 51a6faed
  Glenn Proctor authored 20 years ago
  51a6faed
- Do not copy via a specific host (as these now have a max 256 process per user... · f66ef2f8
  Ian Longden authored 20 years ago
  f66ef2f8
Apr 14, 2005
- added routine to add synonyms given accesion and source id · ba096cfc
  Ian Longden authored 20 years ago
  
  ba096cfc
- pass->password in db initialisation · 335a213a
  Glenn Proctor authored 20 years ago
  
  335a213a
- pod added · e253c783
  Ian Longden authored 20 years ago
  
  e253c783
Apr 12, 2005
- Modifed regulatory feature tests for fetch_all -> get_all · 02a80c53
  Glenn Proctor authored 20 years ago
  
  02a80c53
- Updated comment. · 2d4cca72
  Glenn Proctor authored 20 years ago
  
  2d4cca72
- fetch_all_regulatory_features->get_all_regulatory_features · 37704387
  Glenn Proctor authored 20 years ago
  
  37704387
Apr 11, 2005
- fixed mysql dirs for ecs1* machines · c392b326
  Arek Icrapzych authored 20 years ago
  
  c392b326
- the xref and core databases are now DBConnections hanging of the main BasicMapper class · bfa74daf
  Ian Longden authored 20 years ago
  
  bfa74daf
- missing empty patches added · cfa4800e
  Arne Stabenau authored 20 years ago
  
  cfa4800e
- technically this is not a necessary insert, so its removed · 8b2fe021
  Arne Stabenau authored 20 years ago
  
  8b2fe021
- table gene description removed (included in gene). New columns for gene and transcript. · 233ebdb0
  Arne Stabenau authored 20 years ago
  
  233ebdb0
- Updated for release 31. Added reguatory features etc. · 75059b84
  Glenn Proctor authored 20 years ago
  
  75059b84
- Properly assign XM & XP accessions to RefSeq_dna_predicted & RefSeq_peptide_predicted sources. · 9a3dba2c
  Glenn Proctor authored 20 years ago
  
  9a3dba2c