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Created with Raphaël 2.2.019Sep18131131Aug3024232117109872124Jul201917121110654328Jun27232116141396131May262419171110327Apr2013117428Mar232221171332128Feb2722151487131Jan30272625241817965415Dec139829Nov2421181611974228Oct2120141311754329Sep272623222120161514131286231Aug2625221918171615121153227Jul2521201911875128Jun2423171614109732131May2524171611109654329Apr251913118531Mar232118161510225Feb2423191817161512429Jan2625222118151211875418Dec151411108432130Nov272625242320191817161211109228Oct27[ENSCORESW-2343]. Scripts to trigger dependent builds and check builds through the TravisCI API.Fix merge conflicts.Triggering dependent builds as build stage.User ok on the default distro by granting privileges.To send notifications privately to me while doing the tests on the forked repo.Merge branch 'master' of github.com:Ensembl/ensemblUpdate script for move to EBI serversAttempt to bypass precise dist restriction.trusty does not recognise travis user.[ENSCORESW-2386]. Handling dumping sequence for empty translations.Automatically repair the table if myisamchk report any corruptionENSCORESW-2379: off by one errorMerge pull request #213 from muffato/spurtENSCORESW-2379: use seq_region_end, not endAdded the opposite of slurp: spurtRemoved special treatment for funcgen adaptors, coord systems have been removed from funcgen databases.avoid rounding errorsremove quotesDeadlock still detected, allow restarting the transaction.experimental/in…experimental/innodb_supportSupport analysis storage with proper transaction level code.Allow translation start and stop to be defined within a transcript-level seq editrelease/89 upst…release/89 upstream/release/89Allow translation start and stop to be defined within a transcript-level seq editrelease/88 upst…release/88 upstream/release/88MySQL specific statements.Should lock another table as well.Serialize concurrent transactions with table level locks to avoid deadlocks when inserting analyses.Fixed TypoImproved warning messageUpdated code dealing with flush to make sure that we don't flush source and target when noflush is turned on. Making sure to not flush target if noflushtarget is turned onMerge pull request #208 from james-monkeyshines/masterAllow translation start and stop to be defined within a transcript-level seq editENSCORESW-2355: order by highest score for reproducible resultsENSCORESW-2298: add new biotype mappingsMerge pull request #207 from muffato/bugfix/add_DBAdaptor_undefMerge pull request #206 from muffato/bugfix/get_all_DBAdaptors_undef$species must be defined in Registry::add_DBAdaptorIf a fetched sub-sequence of an LRG doesn't fully encompass a sequence edit, the edit code didn't properly handle it.bugfix: get_all_DBAdaptors() should always be returning an array-refMerge branch 'master' of github.com:Ensembl/ensemblMerge pull request #199 from dbolser-ebi/masterThe update option should use checksum as it's the safest way to sync databases. Update alone is not enough and can lead to database corruption