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Created with Raphaël 2.2.021Aug20171615141096331Jul2724201817131211109543229Jun2827262521201815141312876543131May302925242322211716151411987432127Apr2625232019181716131211543230Mar2927252423222120191615141312987652128Feb27262322212019161514131211987652131Jan2926252423221917161512111098543221Dec20191816Patch to branch-ensembl-46 of the Registry:Add extra entry to show when an ensembl and havana transcripts are perfect matchesAdd extra entry to show when an ensembl and havana transcripts are perfect matchesAdd extra entry to show when an ensembl and havana transcripts are perfect matchesAdd extra entry to show when an ensembl and havana transcripts are perfect matchesadded wornbase_ (gene,locus,transcript) as none downloadable sourcesuse if defined instead of ifadded desc to xrefsload different Go sources as the same so that the xrefs are NOT treated as priority ones which only give one to one mappings, which is in approriate for GOInterproGo added plus other non down loaded source i.e. RFAM etcadded get_dependent_mappingsShorten comment.Properly scope $CUR.Change to overlap_size():If external_db.db_release is anything else than NULL or '1' in theChange to the store() method:Change to the method get_base_count():disclaimer about mismatchesbridge small gapsThis commit was manufactured by cvs2svn to create branch 'branch-project to contigs instead of clones so that it also works for WGS regionsnow also merges adjacent alignment blocksdocumentation updateremoved obsolete log messageShorten core DB check.Give the jobs their own names (using -J).Remove 'exit' left from development.DensityCalc.sh is a convinience script that will run the five Perlmodified get_all_VariationFeatures to add the coverage filter optionadded filtering by coverageWrong place. Now moved to right placeXref Parser for Interpro2Go filechange in server and script names for hgncAdd more informative error message.Added support for secondary_db_name, secondary_db_table fields in external_db.Added extra columns for secondary_db_name, secondary_db_table.Clarify commentsNo need to do macaque twice ...removed second go source for mouseuse the latest version of exonerate