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Created with Raphaël 2.2.04Nov32129Oct2726252221191815141312118654130Sep292724212017161513109872131Aug2726252423201918171613121195429Jul27262322212019161413128762129Jun282524222118171615141110987432128May272421201917141211765423Apr222120191615141312876131Mar3029252322191817161512109853125Feb2423191817161211109543231Jan29282625212019181514131211get_species_and_object_type() now only uses one database handle per hostCorrect obvious error in get_species_and_object_type().created generic search dump scriptDo not by mistake allow new stable IDs to have the "ASMPATCH" prefix.Re-write of get_species_and_object_type() with input from Eugene K.Make get_species_and_object_type() multi-species aware.When looking for the highest used number of a stable ID type, take bothThis commit was manufactured by cvs2svn to create branch 'branch-Handle ASMPATCH and LRG genes.Be more careful with dbname in get_species_and_object_type()And now don't try to use the host name as the database name... doh...be even smarter.Do SECONDLOOP differently in get_species_and_object_type().Remember to cancel previous alarm when we're done.The production database is no longer versioned on the staging server.Taking out the explicit passing of core DBAdaptors for multi-species funcgen adaptors as it was causing a core & funcgen connection to be held on the target serverRemove many uses of lc($logic_name). Use temp variable instead.make sure the cache stores the same case as the original sequence else it will look wierd (as if softmasked) if you get it again using the cacheFix missing ';'.Change $outdir and put it at the top.Now does the right thing, and outputs correct SQL.Add code to catch diffing descriptions and display_labels inBreak an if-statement up and add the display_banner() subroutein fromSyntax error fix.Add a second "known_type" argument to the get_species_and_object_type()Get rid of --subset command line switch.Write SQL to output files, just as for the other script.Put output files in a new subdirectory.Comment fix.Store database handles in a hash rather than in a list.Missed out the call to stop the connection from disconnecting which is now presentScript similar to the "push_master_tables.pl" script but that takes careremoved uniprot synonyms from gene_synonym listacyrthosiphon_pisum configuration added.perltidyhaplotype synonyms and orhologsQuote-changes.More cosmetics.Cosmetic new-line.Need to give this the option to pass in a callback so you can return a 1D array of anything