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Created with Raphaël 2.2.024May23191817161312111098654328Apr262019181514131187131Mar30292824232221181615141110987432128Feb252423222118171615141098743131Jan28272620181413121110765423Dec2117161514131098765432130Nov292524232219181615121110985432129Oct2726252221191815141312118654130Sep292724212017161513Tables are dumped out to a specified directory.Set label to the descriptionAdd synonymsfix for unmapped xref having possible multiple masters having same indexset info_text to null instead of empty stringBetter messaging and tidyUpdated link to xref schema pdf.*** empty log message ***Fixed dump out option.Added option to dump out backup tables.Script for killing mysql processes by db name pattern.corrected slice start coords on Iterator method, data was valid but chunks were not quite rightadded has_window_sizechanged ccds adatabases to be useddo not remove MGI: from the stat only remove ZFIN_ID: and HGNC:. MGI number is stored with the MGI:changed floor to int for ease of useChanged percentage calculation in warnings.Ignore Projections in comparisonsUpdated source ftp for pongo_abeliiUpdated section on BasicMapper.pmRemove misleading print lineSQL to change stable_id_idx to non unique for gene, exon, transcript and translation stable_is tables.Delated UNIQUE INDEX on stable_id, version from exon, gene, translation and transcript stable_id tables.Deleted unique index on stable_id, version from tables exon, gene, translation and transcript stable id.added fetch_Iterator_by_Slice_methoduse api_version to get the name of the vega and core databases to be usedUpdated calculation of xref increase/decrease percentagemoved Slice iterator stuff to BaseFeatureADaptorAdded slice iterator mode to new methodRemove extra ttype keyword at the endSwitched to using iterators for working with results sets. This allows a user to request an iterator if they were wanting to process a very large datasetBringing in each() as a method on IteratorLRG transcripts. Removal of display_xref_ids, as these are not wantedCorrected error message.if a patch fails do not continue applying later patches as these could be dependentCorrected syntaxUpdated TYPE=MyISAM to ENGINE=MyISAM, as TYPE is deprecated and can cause problems with MySQL 5.5Field dbprimary_acc_linkable removed from external_db.Deleted column dbprimary_acc_linkable.Small script to increment the version number of entries in the gene_stable_id table in the human rnaseq database that have the same stable_id