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Created with Raphaël 2.2.013Nov127626Oct2524221918171615126Sep252411754331Aug30282422201715139876331Jul25242320191810643229Jun28262522212019131211764111May98430Apr2725241913965329Mar272623191615141312852128Feb27262322212019161514131298765131Jan3029252423221918171615121110985432122Dec19654130Nov27242321109763231Oct252423201918111065327Sep252221201918131131Aug3024232117109872124Jul201917121110654328Jun27232116141396131May262419171110327Apr20[ENSCORESW-2168]. Use interval tree API, discard binary search.[ENSCORESW-2168]. Use simplified interval tree API, discard binary search.[ENSCORESW-2168]. Simplified API, allow passing only boundaries.[ENSCORESW-2168]. There can be zero coordinates.[ENSCORESW-2168]. Must allow zero coordinates but not undefined ones.[ENSCORESW-2168]. Return query results sorted by start coordinate to harmonise with mapper code.[ENSCORESW-2168]. Test using Interval Tree.[ENSCORESW-2168]. Extended API to support design improvements.[ENSCORESW-2168]. Support for efficient query of points and intervals.[ENSCORESW-2168]. Additional tests to cover design extensions.[ENSCORESW-2168]. Initial prototype implementation of an immutable centered interval tree, to be used in the mapper instead of binary search.[ENSCORESW-2168]. Initial tests for the candidate replacements of binary searches in mappers.[ENSCORESW-2168]. Revert to standard implementation until PP/XS wrapper is implemented.experimental/ma…experimental/mapper_update[ENSCORESW-2168]. Revert to standard implementation until PP/XS wrapper is implemented.Merge pull request #331 from thibauthourlier/hotfix/gene_update_coordsRemoved stable id check in loop. Added commentsUse seq_region_start and seq_region_end when updating gene coordinates in the databaseENSCORESW-2909: remove unused parsersfeature/depreca…feature/deprecated_parsersMerge pull request #319 from Ensembl/feature/null_ox_analysisMerge pull request #296 from wbazant/masterCode review from TiagoMerge pull request #318 from james-monkeyshines/masterENSCORESW-2903: remove possible null analysis_id from unique keyBOOLEANs are equivalent to TINYINT(1), not just 'TINYINT'Add whitespace after name/keywordConsistently use TINYINT rather than BOOLEANAdd whitespace after name/keywordConsistently use KEY rather than INDEXConsistently use INT rather than INTEGER[ENSCORESW-2892]. Updates to ArrayExpress parser routines.feature/xref_ar…feature/xref_array_express_parser[ENSCORESW-2892]. Avoid empty field and linkage_xref attr is text and default is NULL.A little spring-cleaningfeature/xref_pa…feature/xref_parser_reactomeUse references instead of copyingsome odd behaviour with wildcards and SQLiteENSCORESW-2903: remove default 0 analysis_id, should be NULLMerge pull request #305 from Ensembl/no_xml_simpleFix bug: use return instead of nextC. elegans specific parsing of RefSeq_dna fileC. elegans references use WormBase mapping to INSDC protein idsMerge pull request #298 from Ensembl/create_release_tasks-scalar_keys