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Created with Raphaël 2.2.017May1110327Apr2013117428Mar232221171332128Feb2722151487131Jan30272625241817965415Dec139829Nov2421181611974228Oct2120141311754329Sep272623222120161514131286231Aug2625221918171615121153227Jul2521201911875128Jun2423171614109732131May2524171611109654329Apr251913118531Mar232118161510225Feb2423191817161512429Jan2625222118151211875418Dec151411108432130Nov272625242320191817161211109228Oct272221201916151386124Sep23222117161514111098432127AugMerge pull request #196 from Zhicheng-Liu/improvement/remove_typeRemove $registry_register{_TYPE}Merge pull request #195 from Zhicheng-Liu/improvement/get_all_dba_88Use cmp_deeply for testing if two references are pointing to the same objectAdd test cases for get_all_DBAdaptorsReturn all adaptors in the registry in get_all_DBAdaptors if no args suppliedMerge pull request #194 from Zhicheng-Liu/improvement/get_all_dbaUse cmp_deeply for testing if two references are pointing to the same objectAdd test cases for get_all_DBAdaptorsReturn all adaptors in the registry in get_all_DBAdaptors if no args suppliedSet an object's default version to 1 when it is created, rather than when it is stored, to allow undef versions (which can then be stored as NULLs in the database).[ENSCORESW-2265]. Update notes based on next release run.[ENSCORESW-1716]. Query is built considering presence of null values.[ENSCORESW-1716]. Query is built considering presence of null values.[ENSCORESW-1716]. Query is built considering presence of null values.[ENSCORESW-1716]. Query is built considering presence of null values.[ENSCORESW-1716]. Query is built considering presence of null values.[ENSCORESW-1716]. Do not return deprecated date default value.Excluding MYI files is very bad when you copy new tables as these will end up corrupted. Not skipping these will create some noise but at least the database won't be corrupted...Merge branch 'master' of https://github.com/Ensembl/ensemblversion is not always availableENSCORESW-2277: accession pattern at start of lineAdded a --drop option to allow us to automatically drop the target database on the target server if this one already exist. Added an --update option to be able to sync a database between two servers, This option do not use a temp directory and copy straight to the target database after having done a flush and lock. The update option uses rsync with checksum and update, so that we use checksum to know what tables have changed and then we don't overwrite newer tables in the target database. Please note that this option will only copy updated MYD and frm files, MYI files are excluded from rsync as we run an optimize on the target database after the copyignore changes that are the sameMerge branch 'master' of github.com:Ensembl/ensemblUpstream location for MGI files has changedScientific name change for wallaby.Vega DBs retired this release.Had problems with Zebrafish due to some entries having non-digit version.Avoid calling slice->is_circular when there is no slice. Required for ProteinFeatures which cannot have a slice.[ENSCORESW-2247]. Should default to NULL.[ENSCORESW-2247]. Patching test databases.[ENSCORESW-2247]. Patching ontology DB.[ENSCORESW-2247]. Schema version upgrade.[ENSCORESW-2247]. Software version upgrade.[ENSCORESW-2023]. BaseMetaContainer case-sensitive for meta matching.Merge pull request #187 from Ensembl/STABLE_ID_MAPPING_ENSCORESW-2164xref sources for rodent speciessome misformatted entries in RefSeq data[ENSCORESW-368]. Talked to Web, can get rid of redundant method.