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Created with Raphaël 2.2.03Mar26Feb25191817161110985432130Jan292726222120191615147618Dec171311109865432126Nov252421201817141312111087654331Oct3029272421201716151310976229Sep23221812109852127Aug26212019181513121198765432131Jul2928262524232221181716151412111097432127Jun26252416131110965432130May292322212019161512987529Apr2825242322211817161514111084326Mar25232019181714131211629Feb282722212019Updated version to 54.Updated for release 54.Patches for release 54This commit was manufactured by cvs2svn to create branch 'branch-Bug fix:routinely report WU stop codonssplit speed up using unpackUpdated year.updated to include gene_gc attribute calculation, even not being a density feature, convenient to submit all jobs from same wrapperUpdated the following arguments:Formatting of POD & code.Make BaseMetaContainer report database name when there's a problem withBeautification of POD.method to return names of all non-hidden slicesClean up new(), esp. POD.Clean up get_adaptor().removed two lines which made no sense to calculate limits of the extended slicePrimary key should be object_xrefMore testsset xref info_type to INFERRED_PAIR for those onescopy data from xref database to core databasemake sure methods created even if mapping already done as they are need for the readingadded onject_xref to dependent_xrefgene datestamps addeddate format method added"in any form" instead of "of any form".*** empty log message ***Change contact address to helpdesk@ensembl.orgCorrectly spell "acknowledgement".change on line 134 return self rather than empty stringgive warning if strain is not in database or for this particular strainSlice, there is no genotype data available in new methodbind parameters in update & store methodsupdated with latest rulesNow always stores external_db_id if defined and only throws if not defined and type is xrefmore testsmore testsfile updated with some tweaksStore the species idupdate process_statusjust saving for safety, only a few tests added at the moment