Skip to content
Snippets Groups Projects
Select Git revision
  • 101_provider_metakeyupdate
  • 102
  • 102_provider_metakeyupdate
  • 102_testdbpatching
  • 102_versionbump
  • 103_provider_metakeyupdate
  • 103_testdbpatch
  • 103_versionbump
  • 104_testdbpatch
  • 104_versionbump
  • 105_version_bump
  • 108_schema_patch
  • 108_versionbump
  • 109_versionbump
  • Bugfix/ComparaTest
  • Bugfix/CompressedHexDb
  • Bugfix/CompressedHexDb_103
  • Bugfix/Null_translation_id
  • Bugfix/PingErrorMsg
  • Bugfix/TestDbs
  • cpan/113.0.0
  • cpan/112.0.0
  • cvs/release/ensembl/74
  • cvs/release/ensembl/73
  • cvs/attic/branch-e73-db-portability
  • cvs/attic/tag-ensemblgenomes-20-73
  • cvs/release/ensemblgenomes/20-73
  • cvs/attic/unconventional_removal_branch
  • cvs/attic/api_cleanup
  • cvs/attic/unconventional_removal
  • cvs/attic/api_removal
  • cvs/attic/remove_dnac
  • cvs/attic/branch-switchable_adaptors
  • cvs/attic/branch-additional_id_cache
  • cvs/attic/branch-e72-db-portability
  • cvs/attic/branch-e71-db-portability
  • cvs/release/ensembl/72
  • cvs/attic/ensembl_all_alleles
  • cvs/attic/branch-expression_data
  • cvs/release/ensemblgenomes/19-72
40 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.017Jun161514131098732131May2726252420191817161210954329Apr282726252221201918171514121187654131Mar302924232221181715141312111098742128Feb2524211817161514111098743231Jan28272625201918171413121110765423Dec2120171615141310987653230Nov2926252423221817161512111098543Removed return statementSeveral changes to regulatory feature tables.Created; drop & re-create regulatory feature tables.removed empty line from the end of the fileTyposciona xrefs editedAdded RFAM to external dbsoption -drop_db from xref_parser.pl implemented which prevents the 'yes' command (scripting and logging purposes )option -dropdb || -drop_db added to create new xref-db without having to enter 'yes' (scripting purposes )ciona intestinalis sources changedsub md5sum changend - check added if file existsnew external dbname for ciona proteins assembly v1 added and drosphila xref names editedmodule with functions to calculate the effect of variations in transcripts*** empty log message ***cvs/attic/trop-…cvs/attic/trop-workshop-1bugfix for double exons bug in EMBL dump. Incoherent Cache fix for exon preloaded genesrepeat length needed to be assessed inside database fetch (backfix from the HEAD)cvs/release/ens…cvs/release/ensembl/31 release/31 upstream/release/31cache consistency was destroyed, preloaded exons were reloaded into transcripttested the wrong function namemade all registry calls case INsensetive as it was very annoying having to have species, group and type all in the correct case. Also added load_registry_from_db which will load the latest ensembl databases given a database host (and optionally port, user, pass) to search. At prsent only core,variation,estgene,compara and go adaptors are loaded via this method.uniprot sources for drosphila melanogaster edited (fitted to new ebi server-layout)sources for drosophila melanogaster and c. elegans editedput back in missed statementfixed typochanges from branch-vega-31-devget_all_homologous_Genes method catches the exception when calling get_Gene from a compara member object.get_all_homologous_Genes method catches the exception when calling get_Gene from a compara member object.mismatch counts are now storedNew format/source for hugo so parser is changed completelyadd --output-document to wget command linr bit as the file might be changed and not exactly like the urlget the latest live datat for hugo via the web perl scripturl can be over 255 characters so change it to mediumtextTweaked display priorities.Added test for new linkable & priority columns in external_db.Added explicit collation COLLATE=latin1_swedish_ci to every table definition.Updated for release 32.Added support for primary_id_linkable and display_id_linkable, as well as priority in external_db.Modifed get_all_DBLinks to sort xrefs by priority (desc), external db name (asc), display_id (asc) before returning them.*** empty log message ***