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Created with Raphaël 2.2.09Jan7318Dec171211109654328Nov26252322181514121187531Oct302925242321181715121110987432130Sep27262523191817131211109653230Aug29272322201916151298765231Jul302926252423221918171615111043228Jun27262421201918171312111065331May302928232221171514131098732130Apr2927262423221918171615121110953227Mar262522212019181512Automatic merging of dev into masterno need leaving unliked entrieswhen running remove method, run _pre_remove method to update meta_coord tableadded method remove_assemblyadded remove method for coord systemswhen removing features, update meta_coord accordinglyAfter git move functgenomics is now funcgen.Automatic merging of dev into masteradded option $filename for get_FTPUpdated config for metazoan speciesAdding in a missing .gitignore filevariable is called pattern, need to use the same name for rearrangeadded method get_attribAdded the transcript source to each feature line, can be different from gene one (e.g. Havana)print gene source as an attributeadding in dependencies for xrefs in here[ENSCORESW-790]. Switched our ArrayExpress source of species.Moved and renamed to ensembl-analysis/scripts/assembly_patches/assembly_exception_load.pladded ignore_release flag when storing dependent xrefsvalue column in attrib tables can be a lot longer than 40 charactersadded patch_74_75_e.sqlFixing missing and faulty hashbang lines.Faulty (or missing) hashbang lines.Updated for new WBGene\d+ stable idsadded patch_74_75_d.sqladded patch_74_75_d.sqlremove unused lineadded get_transcript_count and get_alt_transcript_count methodssmall typoadded test for new count_all_by_Slice methodadded method count_all_by_Sliceadded remove methods for slices and sequences- Added a fake 'HAP' type to be able to load HAPs from fake 'patch_type' files for HAPs.genome container now uses genome_statistics table in core schematable schema updated to include genome_statistics tablepatch_73_74_h.sql was never releasedtest databases updated to include patch_74_75_c.sqlnew genome_statistics tableadded patch_74_75_c.sqlTests counting transcripts by source(s)