Skip to content
Snippets Groups Projects
Select Git revision
  • 101_provider_metakeyupdate
  • 102
  • 102_provider_metakeyupdate
  • 102_testdbpatching
  • 102_versionbump
  • 103_provider_metakeyupdate
  • 103_testdbpatch
  • 103_versionbump
  • 104_testdbpatch
  • 104_versionbump
  • 105_version_bump
  • 108_schema_patch
  • 108_versionbump
  • 109_versionbump
  • Bugfix/ComparaTest
  • Bugfix/CompressedHexDb
  • Bugfix/CompressedHexDb_103
  • Bugfix/Null_translation_id
  • Bugfix/PingErrorMsg
  • Bugfix/TestDbs
  • cpan/113.0.0
  • cpan/112.0.0
  • cvs/release/ensembl/74
  • cvs/release/ensembl/73
  • cvs/attic/branch-e73-db-portability
  • cvs/attic/tag-ensemblgenomes-20-73
  • cvs/release/ensemblgenomes/20-73
  • cvs/attic/unconventional_removal_branch
  • cvs/attic/api_cleanup
  • cvs/attic/unconventional_removal
  • cvs/attic/api_removal
  • cvs/attic/remove_dnac
  • cvs/attic/branch-switchable_adaptors
  • cvs/attic/branch-additional_id_cache
  • cvs/attic/branch-e72-db-portability
  • cvs/attic/branch-e71-db-portability
  • cvs/release/ensembl/72
  • cvs/attic/ensembl_all_alleles
  • cvs/attic/branch-expression_data
  • cvs/release/ensemblgenomes/19-72
40 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.018Mar1287125Feb21191815141312118729Jan24151615141311104223Dec1918177614Nov13127626Oct2524221918171615126Sep252411754331Aug30282422201715139876331Jul25242320191810643229Jun28262522212019131211764111May98430Apr2725241913965329Mar272623191615141312852128Feb27262322212019161514131298765131Jan30292524RNAPRoductAdaptor: move object creation from sth to own functionstable_id_lookup: extract RNAProduct stable IDs from core databasesRNAProduct: do not hardcode mappings between type IDs and class namesMicroRNA: get rid of FIXMEs from class documentationMicroRNA: enforce hairpin-arm correctness in constructor and setterMicroRNA: use Bio::EnsEMBL::Utils::Exception::warning() instead of carp()RNAProduct + MicroRNA: increment hardcoded type_ids, AUTO_INCREMENT does not like zerosRNAProduct: fix typos in argument descriptionsRNAProduct: fix typo in docstringsRNAProductAdaptor: use rnaproduct_type_id to determine class of returned object(s)Add the first version of Bio::EnsEMBL::MicroRNAAdd some MicroRNA-specific tests to the RNAProduct test suiteUpdate Transcript tests to match current rnaproduct test dataImplement Transcript::get_all_RNAProducts() + its testsRNAProductAdaptor: add empty line before =cutImplement RNAProductAdaptor::fetch_all_by_type_id()Add some RNAProductAdaptor::fetch_all_by_type_id() testsRNAProduct: implement basic type_id supportRNAProduct: add rudimentary tests of type_id()RNAProductAdaptor now supports rnaproduct_type_idRNAProduct: Silence perlcritic about @_ unpacking in get_all_DBEntries() aliasesAdd "return" at the end of RNAProduct::add_DBEntry()RNAProduct: the first DBEntry test now expects existing xrefsImplement DBEntryAdaptor::list_rnaproduct_ids_by_extids()RNAProductAdaptor: implement fetch_all_by_external_name()Add test for RNAProductAdaptor::fetch_all_by_external_name()RNAProduct: implement load()Implement DBEntryAdaptor::fetch_all_by_RNAProduct()RNAProduct: implement get_all_DBEntries() + aliases and add_DBEntry()RNAProduct: add DBEntry testsImplement AttributeAdaptor::fetch_all_by_RNAProduct()RNAProduct: implement get_all_Attributes() and add_Attributes()RNAProduct: add the first batch of attribute testsRNAProduct: implement summary_as_hash()RNAProduct: implement genomic_start() and genomic_end()RNAProduct: add tests for genomic_start() and genomic_end()RNAProduct: seq() can now retrieve data from DBRNAProduct: extend seq() testsRNAProduct: transcript() can now retrieve data from DBTranscriptAdaptor: implementation + test of fetch_by_rnaproduct_id()