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Created with Raphaël 2.2.07Dec652130Nov292524232221181715121110987432131Oct28272625242120191817141312111076543230Sep29282726232221201615141312987652131Aug302625242322191817161512111098542129Jul28272625222120141312118654130Jun2827242322212017161413109865321Alternative script which does processing based upon taxonomy databasesfixed gene synonym xml bugFirst pass addition of this scriptadded 'use' for missing modulefixed GOA xrefsthe TYPE= is showing deprecation warnings since MySQL versions > 3.23changed mapping percentage calculation per alignment length bin to use non-N sequence length like the total mapping percentage per chromosomeMaking sure that the views are defined with security set to the invoker and not the definerUn-used registry import removedRemoving IO::File and going back to the old waysnew dry modeAdding a dry mode which just reports the databases it would have dumpedneed to alter dumps to r/w for user, group & othersneed to alter dumps to r/w for user, group & othersBringing in developments from HEAD into branchChanges to externalise more items and to make the program more configurablemodified to add generic production database detailsAdded muser, mhost and mport so we can pass as command arguments an alternative server which hosts the ensembl_production database; updated the usageCorrect source and add release_uri for UniGene for IxodesDon't pass checksum & sql files back into compress as they're already compressedVersion should be capturing an integerAdd a comment in certain scripts to point out the fact that the PerlBit of prodding to the user if they specified -defaults and -databases on the cmd line but found no serversSet PATH so that a 64-bit Perl will be picked up by all Perl scripts here.CleanupAdd the columns that are used by the web interface.switching to partial db server names to match the output genreatedAdd Ixodes vb_external_description source and remove Ixodes manual_annotaiton sourcedon't need to provide a value for parameters read from config file (usefull for dry_run, verbose etc but hope it doesn't break anythng!)no arguments to nolog, verbose etc, use nolog param to on other hardware, method to retrieve genes unique to a non reference sliceThis commit was manufactured by cvs2svn to create branch 'branch-Better behaviour for zero length lists of featuresRevived!Added success/failure state for printing features versus empty lists.toplevel location code can now deal with excessively large regions and shrinks them down to size if possible or rejects them.Adding the dump_mysql scriptUpdated the metazoan set of species, adding tribolium_castaneum strongylocentrotus_purpuratus nematostella_vectensis bombyx_mori amphimedon_queenslandica atta_cephalotesgot rid of previous core in sub new, it should only be used in TestMappingsfixed line 513