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Created with Raphaël 2.2.017Oct141312111076543230Sep29282726232221201615141312987652131Aug302625242322191817161512111098542129Jul28272625222120141312118654130Jun282724232221201716141310986532126May252423191817161312111098654328Apr262019181514131187131Mar302928242322211816151411changes related to stable_id mergeremove partupdate modechanges related to stable_id mergechanges related to stable_id mergechanges related to stable_id mergechanges related to stable_id mergeadded example of using previous release of core to test new xrefsChange species to database parameterchanges related to stable_id mergechanges related to stable_id mergechanges related to stable_id mergeCheck if $ontology_version is defined before using it. It won't be ifAdd filters to remove Beta characters and to remove backslash from the gene name.Use --skip-opt when dumping the old data to allow for using diff toFinally implement --species and --type correctly.Added SchistoDB and jgi_triad sourcesUpdated SchistoDB source namebug fix to not obtaining results from prepare callremoved partupdate mode, no lonfger feasablechnage 64 -> 65 for mouse and human databasesBarking up the wrong tree...Fix syntax error.Implement --species and --type command line options.Added extra dbs to the listUpdate info on new flags.updated sources for S. mansoni and T. adhaerensstable_id merge changesFix SQL line with too much space in it.Specific logic for assignment of gene names and description valid for all Ensembl Genomes species at the exception of a few species (e.g. S. pombe or S. cer)Added a repeated warning suppression for absent adaptor or dbIDstable_id merge changesAdded EG11 plants and protists sources and species. Also added S. pombe sources and speciesuse POSIX.Mark two of the options as not currently implemented, until I implementanother name chnage in expr to match file name changeonly get species_id if doing official namingchange pass variable name to passive to make it more obvious. Bettere checking of ftp statusfile name changed so change expr to matchDump of the production database before genebuild handover for release 65.LSF dependencies removed. Correction of sql statement to get the list of cores.