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Created with Raphaël 2.2.011Jan109654323Dec22212019141312987652130Nov292524232221181715121110987432131Oct28272625242120191817141312111076543230Sep29282726232221201615141312987652131Aug302625242322191817161512111098542129Jul282726get_set_lists specific to speciesadded comment when source_id is not foundGot my names muddled upData dir is always set so we need to override if given a target location. Also formatting changes appliedAdding an option to specify a non standard tmp locationMissed a spaceApparently elements were a hash and not a stringBugAdding a check to warn a user if the applied patches for the current version are equalOnly hint about fixing if it was latest version and type was what was wanted.Trying to get the error messages to dissapearAdding a bit more chatter to the scriptupdated sql statements to select features on the appropriate chromosomesample config file for script test_assembly_mapping.plsample config file for script load_feature_mappings.plproduce stats on the quality of feature mapping between two assembliesload feature location in old db, new db and feature mapping between two assembliesUpdate year to 2012Adding in a script to make the yearly copyright notification update a bit easiernow catches schema versions as empty stringsAdded specific code for Scer for parsing the EC number from the description lineAttach SGD GO mapping to translation objectsAttach SGD mapping to translation object rather than transcript objects, so GO mapping get also attach to translations. Commented STDERR statements;deleted misplaced croak statementBug found meaning the specified target location was never used & the script would have brokenProxy for DBConnections. In to make sure code is not lost for the futureDeprecating get_Species() so tests need to be updatedDeprecating get_Species()Removing the use of get_Species()Code used to create dynamic proxiesadded species cavia_porcellusMore docsAdding a check to prevent unintentional dropping of mart tablesRemoved usage of get_Species()Removed as specified in release declarationsupdated readmeAvoid the lines starting by a comment character (# or --)Adding support for mart temporary tables and making the documentation clearerGiving this the option to specify the default location which should help when using these. Also switch to env perl and used warnings explicitly rather than rely on #! linesAdding an option to copy to a non standard location for use by teams who do not store their MySQL data in its data directory