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Created with Raphaël 2.2.028Jan26252120191815141312118754324Dec231817161514111042127Nov25232019181716131211109654230Oct292827232221201916151413975229Sep252422211817151411108732128Aug2726252420191714131211105331Jul30292827252322212018171614108632129Jun24232218161510985432129May282726222120191715131211876530Apr272322212015149872131Mar26252419181716Added direct swissprot mappings fro human, mouse and ratFix previous commit.In load_registry_from_multiple_dbs():changed display_label for havana_IG_gene to 'Ig/T-cell receptor gene'.Another fix for partial codonsBe kind to staging servers.Fix to partial codonFix to partial codonFix to partial codonFix for partial codonsAdded CDS coords for PARTIAL_CODON consequencesFixes for partial codons and unusual first exon phasesReformat.Removed zero-setting of the canonical_transcript_ids as it is notModifications to the code:*** empty log message ***Added get_all_VariationFeatures_by_VariationSet methodAdded duck specific analyses.Set status of duck sourcesIgnore transcripts with biotypes 'nonsense_mediated_decay' andAdded duck data sources.Add canonical_translation_id plus data to test databases.Support for canonical translations.Support for canonical translations.Comment out a finish() which is not needed (since we're getting allClean up disconnect_when_inactive().Added description for 'Encode Duke excluded regions'.command line arguments standardized to the ones used in the genebuild scripts ( dbhost dbname dbport ... )removed erroneous partition notesadded some notes about partition supportFix bug in call to rearrange().Readability and modernisation.Compare database server ports using 'eq' instead of with '=='. AvoidsSwitch from a 32-bit Perl installation to a 64-bit Perl installation for*** empty log message ***Typo fixed.cvs/release/ens…cvs/release/ensembl/55 release/55 upstream/release/55Increase new length from 128 to 255.# patch_56_57_f.sqlEntry for duck added.Merge in some changes that does not change behaviour from private copy.