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Created with Raphaël 2.2.04Feb31Jan302928272423222120181715131097318Dec171211109654328Nov26252322181514121187531Oct302925242321181715121110987432130Sep27262523191817131211109653230Aug29272322201916151298765231Jul302926252423221918171615111043228Jun27262421201918171312111065331May30292823222117151413109attrib_type code and statistic name are not always the sameMaximum search distance identified as necessary, and exclusion of self from the results.Up to minimum working state. Code runs, test data ready, but no useful tests yet.Merge branch 'hotfix/basefeatureadaptor_circularitytest'Merge branch 'hotfix/basefeatureadaptor_circularitytest' into release/75Check for a defined Slice object before asserting circularity tests.$opt_type is not always defined, solving 'undefined value' messageENSCORESW-834 - Improvement of circular genome support in AlignFeatures.always tell us what a build didApparently YAML & travis do not like tabs over spaces. Ok fineEncryption of target emailschange not ready for branch 75transcript counts can now be fetched using transcript_cnt and transcript_acntImproving error reporting from the Scalar moduleAutomatic merging of dev into mastertranscript table in patch database now contains dataAutomatic merging of dev into masterthere can be several statistics for prediction_countMerge branch 'experimental/fixgtfdumper'Automatic merging of dev into mastercorrected argument for structural_variation countPreliminary commit of a more inclusive get_nearest_Gene method using Nathan’s largely unedited code.Automatic merging of dev into mastercanonical_annotation has been retired, removing leftover variablesMerge branch 'Anacode-experimental/db-portability/master'Found another delete using IN rather than joins.Addition of Apache2.0 license to all code.Merge branch 'master' of https://github.com/Ensembl/ensemblLICENSE should not be executable[ENSCORESW-822]. Bio::EnsEMBL::Utils::BiotypeMapper module retired.[ENSCORESW-822]. Removed textual reference to BiotypeMapper[ENSCORESW-822]. BiotypeManager decommissioned in favour of Biotype manager directly talking to the production db.Automatic merging of dev into masterannual copyright update for 2014update contact detailsHaving to fix the problems with OperonTranscriptAdaptor and OperonAdaptor. We must have the columns for dates in the bind variables not in the explicit bindsmerging in new code for LANG typesMerge branch 'experimental/db-portability/master' of https://github.com/Anacode/ensembl into Anacode-experimental/db-portability/mastermissed onemodifying the control codes to avoid non-ascii characters being used