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Created with Raphaël 2.2.010Mar987432128Feb252423222118171615141098743131Jan28272620181413121110765423Dec2117161514131098765432130Nov292524232219181615121110985432129Oct2726252221191815141312118654130Sep292724212017161513109872131Aug2726252423201918171613121195429Jul272623222120Fixed small bug.Variation:Added a couple of biotypes to the list.Update analysis description for 'percentagerepeat'.Update analysis descriptions for 'genedensity' and 'knowngenedensity'.Change some defaults.Add more info output when missing databases.Raise the transcript score threshold from zero to 0.25. This will inChange to db names for clone-based genes to overwrite.Changes for automated HTML generation.Overwrite Ensembl_clone_name xrefs in zebrafish.Remove mentioning of the old GO database ensembl_go_NN.Updates to table.sql for automatic HTML documentation.MOVED HERE FROM ensembl-pipeline/scripts*** empty log message ***Rhoda's changes, mainly for zebrafish name projectionwe now have a controlled vocabulary term to use so don't add a human readable onewe now have a controlled vocabulary term to use so don't add a human readable onecvs/release/ens…cvs/release/ensembl/61 cvs/release/vega/61-1 release/61 upstream/release/61Add primary key analysis_web_data_id in analysis_web_data.dbentries MUST have an analysis now due to INSERT IGNORE in dbentrie cahnged to just INSERTupdated to lastest versions of files. Plus ZFIN descriptions filenow use official naming routinesbug fix to get all the vega transcript extensionsAdd OPTIMIZE TABLE at the end of parsing.More proper use of bind_param().Put pragmas before "package".Fix some other cases where bind_param() was not used.Do proper binding of parameters.Trying to improve our error reporting after user feedbacktidy upignore WITHDRAWN entriesget descriptionsadded Vega_transcripts as a way to get vega mapping and fixed but which only allowed one entry in the objext xref table hence reducing the number of matches for Vegaadded Vega_transcripts as a way to get vega mapping and fixed but which only allowed one entry in the objext xref table hence reducing the number of matches for Vegaaux_GO_goslim_goa_map now aux_GO_goslim_generic_mapremoved unnecessary commentcorrected small bug... but I'm not sure if the logic is correct...Updated table set tags*** empty log message ***Shema version patch.