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Created with Raphaël 2.2.04Jan21Dec201917141312111076543230Nov2928272623222120191817161413129876532131Oct3029262524232218171615121098543128Sep2725242118171413121110654330Aug2924232221201716151413109876432131Jul3027262524232019181613119543229Jun28272625232221Added gene_display_xref_sources subroutine.Add synonym sources for vectorbase species.Never allow someone to commit a MultiTestDB fileHave added all plants missing species, plus all gramene plants speciesHave added all plants missing species, plus all gramene plants speciesHave replaced the deprecated "fetch_all_failed_jobs" by "fetch_all_by_analysis_id_status".check if source is HGNC or MGIdo not project all sourcesdo not add version numbers for uniprot gene namesnot all species have a common name, use production_name as a key insteadTrying to improve the readmesVery basic gff serialiser testDo not add trailing ; since this is not part of the allowed specCopy is_patch onto branch 66 now that anacode have moved on. -- ds23cvs/release/ens…cvs/release/ensembl/66 release/66 upstream/release/66Update branch 66 now loutre is on 66 to allow empty params as not missing, asLoutre password is optional onto 66 because loutre is now on 66 schema.Add get_annotrack_params to branch 66 for loutre.Adding a no_error flag to allow for simple single value querying where the number of rows returned could be ambigiousGetting rid of a script which still refers to the contig tableGo through an object and make sure everything is populated once we go through a call of $gene->load().Added the method get_all_StructuralVariationFeatures_by_size_rangeAdding get_all_IntronSupportingEvidence()Adding documentation and also switching to using typeAdding defaultsTwo modules used to check a flat file dump parsersparse annotrack db detailstypogiven two databases of the same species, compares the xrefs used for gene display to describe the statistics of what has changed between databasescvs/attic/Root_…cvs/attic/Root_ensembl_all_allelesApplied wait constraints to all three calls. Could have refactored, but the system calls are fiddly and I'll probably make more mistakes that way.Added a queue waiting command to prevent e.g. Human and Mouse projecting simultaneously when Mouse relies upon Human to be complete and correct.Switching back to hive capacity as the current hive pipeline code isn't making much sense to meSwitch to analysis capacityReplaced � and � with & and ^. At least less can render them.Replaced error symbols �� and �� with && and ^^ that can be rendered and/or typed on native linuxUpdated the display of the list of tables (top of the page) and the header of each group of tables.Zapped icky \t charactersIf PASS is not pulled out into a local variable then passed into DBI we will attempt to connect to a database (DBI->trace() confirms the passing of a password). Perl is very oddUse the actual DB nameDo not clutter screen with unwanted infoSwitch to unique tables and not a global array