Skip to content
Snippets Groups Projects
Select Git revision
  • 101_provider_metakeyupdate
  • 102
  • 102_provider_metakeyupdate
  • 102_testdbpatching
  • 102_versionbump
  • 103_provider_metakeyupdate
  • 103_testdbpatch
  • 103_versionbump
  • 104_testdbpatch
  • 104_versionbump
  • 105_version_bump
  • 108_schema_patch
  • 108_versionbump
  • 109_versionbump
  • Bugfix/ComparaTest
  • Bugfix/CompressedHexDb
  • Bugfix/CompressedHexDb_103
  • Bugfix/Null_translation_id
  • Bugfix/PingErrorMsg
  • Bugfix/TestDbs
  • cpan/113.0.0
  • cpan/112.0.0
  • cvs/release/ensembl/74
  • cvs/release/ensembl/73
  • cvs/attic/branch-e73-db-portability
  • cvs/attic/tag-ensemblgenomes-20-73
  • cvs/release/ensemblgenomes/20-73
  • cvs/attic/unconventional_removal_branch
  • cvs/attic/api_cleanup
  • cvs/attic/unconventional_removal
  • cvs/attic/api_removal
  • cvs/attic/remove_dnac
  • cvs/attic/branch-switchable_adaptors
  • cvs/attic/branch-additional_id_cache
  • cvs/attic/branch-e72-db-portability
  • cvs/attic/branch-e71-db-portability
  • cvs/release/ensembl/72
  • cvs/attic/ensembl_all_alleles
  • cvs/attic/branch-expression_data
  • cvs/release/ensemblgenomes/19-72
40 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.024Feb23191817161211109543231Jan292826252120191815141312118754324Dec231817161514111042127Nov25232019181716131211109654230Oct292827232221201916151413975229Sep252422211817151411108732128Aug2726252420191714131211105331Jul30292827252322212018171614108632129Jun24232218161510985432129May282726222120191715131211876530Apr2723222120151498Methods now return empty array ref instead of undef. Removed annoying warning.Fix example in doc for fetch_by_gene_stable_id().Take account of read coverageInclude read coverage filtering for sequenceadded total size at the end of main tableDocumentation updated.Remove this script and rename it to load_alt_splice_gff.plAdded seq method to get aligned sequenceChanged aligned_seq to seqAdded aligned_seq methodNew attribs from Ensembl Genomes (Uma).make sure type is lower caseAdding dictyBase (id=20303) for Ensembl Genomes (from Uma).bug fix for get_direct_xrefAdded StrainSlice methodsAdded expanded_length method and changed seq method to use itInitial check inmake sure there is a species setfixed the various methods routines. this was not working at all but no one ever used it so was never noticed. Needed now for uniprot swissport having a different percentage cutoffjust do the gene slice project rather than the gene transfer it is safer and quickergapped alignment at 100 percentupdated amino acid sub textDrop a $sth->finish().Make SQL nicer.Made amino_acid_sub more generic.Update documentation slightly.merge from branch-ensembl-dec09new type for VegaAdd "_synonym" to database name for cross reference lines that are generated from external_synonyms (previously they were indistinguishable).making sure this is on the head!Added masked_seq and supporting methodsadded new methods to store/remove AssemblyExceptionFeature objects in the databaseadded new test to store/remove AssemblyExceptionFeatures in the databaseAlso write error reports.Readability fix in store().Add missing license boilerplate.Buglet fix: In sub_SeqFeature(): explicitly return empty list.BUGFIX: In transform(): $self->project() returns a listref.