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Created with Raphaël 2.2.026Jun2518171511103226May212019181387629Apr232117151397231Mar27262524231917161211224Feb191716131211109230Jan2726232221161514131298723Dec191615121110985432128Nov2726252422201817141211430Oct2928272322211614131098762129Sep23221918109854129Aug2827262221201918151211107130Jul24222117151093230Jun26251918163230May292321191514228Apr2423221614987428Mar2524211914131110327Feb26252119181714131210765431Jan3029ENSCORESW-469: add Gene3D and Panther sourcesignore GOs if status is not DUMP_OUTthere is not always an identity_xrefcompara not included any moreFixing typo sequenceMerge branch 'feature/switchable_adaptors' into experimental/alternative_sequence_storesFixing some problems with implementation and writing a testMerge branch 'feature/switchable_adaptors' into experimental/alternative_sequence_storesadding in tests for alternative storeDelegate to the faidx object for checking seq region existence.Merge branch 'feature/switchable_adaptors' of https://github.com/Ensembl/ensembl into feature/switchable_adaptorsMissed a $registry variable instead of using $REGISTRY.[ENSCORESW-578]. First commit of the switchable adaptors.Merge branch 'master' of https://github.com/Ensembl/ensemblENSCORESW-1347: set havana status on genes/transcripts which are not known through accepted sourcesmispellt coordinateAdd missing bracket to StrainSliceAdaptorBug fix for rare get_nearest_Gene calls made on features very very far from anything else and returning nothing at all.updated for release 81ENSCORESW-629: add predictions in gtf serializerENSCORESW-1316: add metadata if dba argument providedwith -species option, ignore all multi species dbsmore tests for utr, exonTranscript and CDS objectsbetter capitalisation for UTR objectsadd rank for ExonTranscript objectadd transcript field for UTR featuredefault slice strand is 0external_name renamed to Namestrand for slice is set to '.'better SO description and updated testswrong capitalisation for Aliasassembly_name is not needed in generic featureremove unused fieldslice can be a feature too for gff dumpingCDS object has a translation_id which can be shared across CDS objectsnew CDS, ExonTranscript and UTR featuresENSCORESW-1194: new get_all_utr_features methods for transcriptENSCORESW-1350: check coord_system_version for synonymremove unwanted print outrelease version update to 81