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Created with Raphaël 2.2.017Apr1613121110543130Mar29282724232221201916151462129Feb282726242322212017161514131098762131Jan3025242319181716131211109654323Dec22212019141312987652130Nov292524232221181715121110987432131Oct2827262524212019181714131211Do not do meta_coord calculations for the ditag table.Getter/setter for the header functionAdded note about =head2 in DESCRIPTION section, and corrected a typo.Fixed some icky PODdon't strip off the SSF prefixfile format changedupdated MIM2GENE source urlcroaking when '--(db)host' isn't passed, adding -D to the list of options recognized for --dbname (after MySQL), improving readability of the dba_opts data structuredocumentation updatesSupporting passing args into the Gzip layerstore density features in batchstore density features in batchcount only stored density featurescount only density features which have been storedchanged result title format as request by Paul/Dan Smake sure dbs flagged as having variation positions changed have a variation dbRound number serialisation okTesting if avoiding formatted writer speeds up our serialiserRemoved problematic (!defined $release_file) test.Updates for VectorBase speciesextended memory limit for exonerate jobsadded config for turkeyAdding the method is_chromosome to the Slice object. This kind of method is not nice but does deal with a lot of issues with seq_regions being attached to chromosome coordinate systems which are infact unassembled regions.Setting small start to 0. This should be a safe thing to do looking at the currently logic usage.Header function should not be responsbile for the addition of a > for the FASTA header. That's the serailisers responsiblity. Also removed major DB dependencyHeader function should not be responsbile for the addition of a > for the FASTA header. That's the serailisers responsiblityCleaning up methodAdding a method to ignore cache warningsChanging the casing of these groupings & making sure that error messages are more informativeThis is an Ensembl script; defaults should reflect this & not other team's defaultsadded messages on how long each script takes to run on averagecopy user and password from the first host, add memory limit of 2GbAdded memory requirements and added the Nile tilapia to the projection species list.printd()?Taking out subgenus as well since this again was not part of the originalExclude the subgroup and group to get closer to our original classificationFix for trinomialsOnly remove tables which are bak and backup to avoid untintentional removal of temp tables like tmp_individual_genotypeSystem name was not a core oneAllowing species as a rank