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Created with Raphaël 2.2.011Jan109654323Dec22212019141312987652130Nov292524232221181715121110987432131Oct28272625242120191817141312111076543230Sep29282726232221201615141312987652131Aug302625242322191817161512111098542129Jul2827changing logicmaybe don't negate next time ...Few updates. If a db has been replaced by a later assembly the script will do an update not an insert. We also remove the databases from the db table which are no longer active but only after a user confirms itoverride SubmitMapper get_set_lists methodget_set_lists specific to speciesadded comment when source_id is not foundGot my names muddled upData dir is always set so we need to override if given a target location. Also formatting changes appliedAdding an option to specify a non standard tmp locationMissed a spaceApparently elements were a hash and not a stringBugAdding a check to warn a user if the applied patches for the current version are equalOnly hint about fixing if it was latest version and type was what was wanted.Trying to get the error messages to dissapearAdding a bit more chatter to the scriptupdated sql statements to select features on the appropriate chromosomesample config file for script test_assembly_mapping.plsample config file for script load_feature_mappings.plproduce stats on the quality of feature mapping between two assembliesload feature location in old db, new db and feature mapping between two assembliesUpdate year to 2012Adding in a script to make the yearly copyright notification update a bit easiernow catches schema versions as empty stringsAdded specific code for Scer for parsing the EC number from the description lineAttach SGD GO mapping to translation objectsAttach SGD mapping to translation object rather than transcript objects, so GO mapping get also attach to translations. Commented STDERR statements;deleted misplaced croak statementBug found meaning the specified target location was never used & the script would have brokenProxy for DBConnections. In to make sure code is not lost for the futureDeprecating get_Species() so tests need to be updatedDeprecating get_Species()Removing the use of get_Species()Code used to create dynamic proxiesadded species cavia_porcellusMore docsAdding a check to prevent unintentional dropping of mart tablesRemoved usage of get_Species()Removed as specified in release declarationsupdated readme