Skip to content
Snippets Groups Projects
Select Git revision
  • 101_provider_metakeyupdate
  • 102
  • 102_provider_metakeyupdate
  • 102_testdbpatching
  • 102_versionbump
  • 103_provider_metakeyupdate
  • 103_testdbpatch
  • 103_versionbump
  • 104_testdbpatch
  • 104_versionbump
  • 105_version_bump
  • 108_schema_patch
  • 108_versionbump
  • 109_versionbump
  • Bugfix/ComparaTest
  • Bugfix/CompressedHexDb
  • Bugfix/CompressedHexDb_103
  • Bugfix/Null_translation_id
  • Bugfix/PingErrorMsg
  • Bugfix/TestDbs
  • cpan/113.0.0
  • cpan/112.0.0
  • cvs/release/ensembl/74
  • cvs/release/ensembl/73
  • cvs/attic/branch-e73-db-portability
  • cvs/attic/tag-ensemblgenomes-20-73
  • cvs/release/ensemblgenomes/20-73
  • cvs/attic/unconventional_removal_branch
  • cvs/attic/api_cleanup
  • cvs/attic/unconventional_removal
  • cvs/attic/api_removal
  • cvs/attic/remove_dnac
  • cvs/attic/branch-switchable_adaptors
  • cvs/attic/branch-additional_id_cache
  • cvs/attic/branch-e72-db-portability
  • cvs/attic/branch-e71-db-portability
  • cvs/release/ensembl/72
  • cvs/attic/ensembl_all_alleles
  • cvs/attic/branch-expression_data
  • cvs/release/ensemblgenomes/19-72
40 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.024Jun222118171615141110987432128May272421201917141211765423Apr222120191615141312876131Mar3029252322191817161512109853125Feb2423191817161211109543231Jan292826252120191815141312118754324Dec231817161514111042127Nov25232019181716131211109654230Oct292827232221201916151413975229Sep252422211817151411108732128Aug2726252420191714131211105331Jul30292827252322No checks need for havana status now just set themremove need for ontology version, plus new field needed to import HGNC for LRGsCheck for empty list the right way.For readability.remove WU: for mouseBugfix to _list_dbIDs() when it was using the generic bind params method from DBAdaptor however we never went through generic_fetch() so params were never bound.added support for fetching somatic mutations from a slice, and tidied up the general variation feature fetching codeRe-jig seq().set host dependent on species if not set, plus some cleaning upSimplify get_Species() a bit.Check for undef returned by fetch_by_Transcript() in store().reset staus for genes and transcripts to those from havana if ALL transcripts for a gene and the gene itself have a valid status in havanaAdd time to seq_region_attribNo functional changes, just tidying up comments.*** empty log message ***Added check that alt translations is defined.Fix to Read Coverage masking of sequenceis_reference method addedchange to using registry so that we do not have to specify the release number. That way we do not have to change the config file for every releaseUpdated.Script to add mouse knockouts to the simple featuresMake _list_dbIDs() filter on species_id for multi-species databases.set API_VERSION to 59 ready for staging and next releaseAdding four new methods:Add 'schema_type' to the list of meta keys that are not species specific.Preparatory changes to _list_dbIDs() before making it take species_idstore the ensembl stable id and havana status for genes and transcripts to be used laterRun "ANALYZE TABLE object_xref" after dropping and adding indexes to theFix SQL bugs.Fix SQL bug.*** empty log message ****** empty log message ***allow us to patch multiple userdata databases created on different initial schemasAssembly Novel/Fix Patch typeremoved second check on slice which was wrong anywayCommitting old stuff.Committing old stuff. This one is to correct for new semantics of bsub.Added International Knockout Mouse Consortium Konckoutschanged parsers as curated_trascriptParserhas now replaced HGNC_curated_transcriptParser and MGI_curated_transcriptParsercurated_transcriptParser now replaces HGNC and MGI variants as it was basically the same code in both