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Created with Raphaël 2.2.01Jun26May252423191817161312111098654328Apr262019181514131187131Mar30292824232221181615141110987432128Feb252423222118171615141098743131Jan28272620181413121110765423Dec2117161514131098765432130Nov292524232219181615121110985432129Oct2726252221191815141312118654130Sep2927242120Fix bug that was causing no names to be projected in species other than zebrafish.*** empty log message ***Added change to ZFIN regular expression for Corf gene namesCCDS -> Ensembl transcript is not a one to one mapping so cannot use a key value pairs in hash. Hence now the hash uses a anonymous array to stire multiple valuesSome redundant Lite references removed from commented out tests.Additional references to Ensembl::Lite removedRemoving ancient Ensembl::Lite package that is neither used nor functionaladded / to uniprot search to make sure we do not link to uniprot_genenameadd the synonymsreturn the xref_id of the newly created xrefprint the number of synonyms added too as this is usefullDeleted data for dbprimary_acc_linkable.release changed from 62 -> 63better messages and tidyAdded confirmation before overwriting a file.Tables are dumped out to a specified directory.Set label to the descriptionAdd synonymsfix for unmapped xref having possible multiple masters having same indexset info_text to null instead of empty stringBetter messaging and tidyUpdated link to xref schema pdf.*** empty log message ***Fixed dump out option.Added option to dump out backup tables.Script for killing mysql processes by db name pattern.corrected slice start coords on Iterator method, data was valid but chunks were not quite rightadded has_window_sizechanged ccds adatabases to be useddo not remove MGI: from the stat only remove ZFIN_ID: and HGNC:. MGI number is stored with the MGI:changed floor to int for ease of useChanged percentage calculation in warnings.Ignore Projections in comparisonsUpdated source ftp for pongo_abeliiUpdated section on BasicMapper.pmRemove misleading print lineSQL to change stable_id_idx to non unique for gene, exon, transcript and translation stable_is tables.Delated UNIQUE INDEX on stable_id, version from exon, gene, translation and transcript stable_id tables.Deleted unique index on stable_id, version from tables exon, gene, translation and transcript stable id.added fetch_Iterator_by_Slice_method