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Created with Raphaël 2.2.027Jun262421201918171312111065331May302928232221171514131098732130Apr2927262423221918171615121110953227Mar26252221201918151211654128Feb27262522212019181514131211754130Jan29252422211716151410987421Dec201917141312111076543230Nov2928272623222120191817161413129876532131Oct3029262524232218171615121098543128Sep27starting release 73, added schema version patchupdated to release 73get_all_Transcripts no longer returns the naked cache to user scripts. Protection from obliterating transcripts by manipulating the cache from outside of the object.ENSCORESW-517: cdna2genomic returns 'genomic' coordinates which are relative to the slice of the featureadded tests for assembly exceptions on patcheswhen we have to map between coordinate systems, returns seq_region idadded data to test patch regionsadded patch dataadded ensembl/havana type analysesreplaced ok tests with is testsreplaced ok tests with is testsNew test for fetch_all_dependant_terms.now incorporated in ensembl-production/modules/Bio/EnsEMBL/Production/Pipeline/Productionremove deprecated scriptsxref projection is now run from ensembl-productionremoving alternative splicing pipeline from ensembl-corealternative splicing pipeline is run by production and now in ensembl-production checkoutontology schema files stay in ensembl-core*** empty log message ***ontology population scripts have moved to ensembl-production checkout*** empty log message ***production database has its own checkout in ensembl-productionscripts are now part of ensembl-production pipelinedensity scripts moved to ensembl-production/modules/Bio/EnsEMBL/Production/Pipeline/Productionlink_out directory moved to ensembl-productiondata_files directory now in ensembl-productionremoved species-specific configuration file which do not have anything different from the main mapperENSCORESW-482: update to external_db namesENSCORESW-482: updated external_db name, Uniprot_genename is now Uniprot_gnENSCORESW-482: update to external_db namesENSCORESW-504: added explicit example for fetch_all_by_hit_name methodParser to use existing InterPro data from a core dbConfig for new metazoan speciesgene names can be duplicated, so use of a insert ignore when adding the corresponding transcript nameAdding parameter flag to switch on/off SNP analysesstore_on methods can take object or object_id for genes, transcripts and translationsremoved duplicated methodremoved duplication of type variableENSCORESW-508: warn if no species.production_name foundTabs purged.