Skip to content
Snippets Groups Projects
Select Git revision
  • 101_provider_metakeyupdate
  • 102
  • 102_provider_metakeyupdate
  • 102_testdbpatching
  • 102_versionbump
  • 103_provider_metakeyupdate
  • 103_testdbpatch
  • 103_versionbump
  • 104_testdbpatch
  • 104_versionbump
  • 105_version_bump
  • 108_schema_patch
  • 108_versionbump
  • 109_versionbump
  • Bugfix/ComparaTest
  • Bugfix/CompressedHexDb
  • Bugfix/CompressedHexDb_103
  • Bugfix/Null_translation_id
  • Bugfix/PingErrorMsg
  • Bugfix/TestDbs
  • cpan/113.0.0
  • cpan/112.0.0
  • cvs/release/ensembl/74
  • cvs/release/ensembl/73
  • cvs/attic/branch-e73-db-portability
  • cvs/attic/tag-ensemblgenomes-20-73
  • cvs/release/ensemblgenomes/20-73
  • cvs/attic/unconventional_removal_branch
  • cvs/attic/api_cleanup
  • cvs/attic/unconventional_removal
  • cvs/attic/api_removal
  • cvs/attic/remove_dnac
  • cvs/attic/branch-switchable_adaptors
  • cvs/attic/branch-additional_id_cache
  • cvs/attic/branch-e72-db-portability
  • cvs/attic/branch-e71-db-portability
  • cvs/release/ensembl/72
  • cvs/attic/ensembl_all_alleles
  • cvs/attic/branch-expression_data
  • cvs/release/ensemblgenomes/19-72
40 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.07Jun6131May30292824232221171615141098632127Apr26252423201918171613121110543130Mar29282724232221201916151462129Feb282726242322212017161514131098762131Jan3025242319181716131211109654323Dec22212019141312987652130Nov292524232221181715Switch to using Test::More and using note not debugAuto-increment IDs means we cannot guarentee/reset the DB every time so assert that we were given an idUse note rather than debug. Info comes out when you're runing the code and not in test harness modeBio::Seq import was missingSpurious colon removed.Added a default version of 0 to the constructor.Allowing us to strip out some unwanted test case SQL attributesupdated method documentationCaught a mini-blunder in the first loop.Altered to remove ugly paired lists of species.If it was already a test db we were dumping then the user and test_db prefix got added onto the species name.added percentgc density type to fetch_statsTypo for regionFixing get_Species() and making sure it doesn't give back "bad" dataNew capture method for STD streamsconfig changes for release 68, change to species name for squirellAdapted to use new file format, with combined the synonyms.ENSCORESW-165. changes intron_supporting_evidence to allow linkage to a transcriptENSCORESW-120 & ENSCORESW-165. Adding patches b and c to this module. b covers changes to xref and object_xref to make the unique key operate as expected. c changes intron_supporting_evidence to allow linkage to a transcriptRemoved synonym data source. MGI have combined the data into the single file. Note: Used to be a bulky SQL download, now just Tab-separated.Extension to patch to remove null entries from the xref table. Has added implications with updating object_xref. If this patch succeeded then this is not an issue for youAdded efficiency boost to fetch_all_by_external_name and sub-methods. Wildcards now escaped in positions 1 and 3 unless user supplies override flag.usageAdding the xref schema changes from core. I've done a cursory glance through the xref code. Looks like all inserts should be okadded AssemblyInfo to get_available_adaptorsmodule for fetching assembly information and statisticsTests altered to include threaded insertions to test for "transactional" behaviourXref table overhaul. Uniqueness enforced, coupled with insert-then-query execution order in DBEntryAdaptor.ENSCORESW-166. Switched to bringing back the DB release and only asking to remove the DB if it was not the same as the current user submitted releaseupdated commentsupdated instructions for creating the ontology databaseupdated url for SO.obo fileupdated instructions for creating the ontology databaseBugfix submitted by Kusalananda. Fixes the error message as before it was mis-leadingOnly run --fixlast logic if the schema had a versionMissing option added to summary section of helpFixes for --fixlast making sure we do not attempt to fix a schema too far in the pastUpdated schema to match release 67, and replaced null test data with valid 'zeroes'Tidied differences in documentation and script options: fixlatest -> fixlastAdding a registry version to CliHelper