Skip to content
Snippets Groups Projects
Select Git revision
  • 101_provider_metakeyupdate
  • 102
  • 102_provider_metakeyupdate
  • 102_testdbpatching
  • 102_versionbump
  • 103_provider_metakeyupdate
  • 103_testdbpatch
  • 103_versionbump
  • 104_testdbpatch
  • 104_versionbump
  • 105_version_bump
  • 108_schema_patch
  • 108_versionbump
  • 109_versionbump
  • Bugfix/ComparaTest
  • Bugfix/CompressedHexDb
  • Bugfix/CompressedHexDb_103
  • Bugfix/Null_translation_id
  • Bugfix/PingErrorMsg
  • Bugfix/TestDbs
  • cpan/113.0.0
  • cpan/112.0.0
  • cvs/release/ensembl/74
  • cvs/release/ensembl/73
  • cvs/attic/branch-e73-db-portability
  • cvs/attic/tag-ensemblgenomes-20-73
  • cvs/release/ensemblgenomes/20-73
  • cvs/attic/unconventional_removal_branch
  • cvs/attic/api_cleanup
  • cvs/attic/unconventional_removal
  • cvs/attic/api_removal
  • cvs/attic/remove_dnac
  • cvs/attic/branch-switchable_adaptors
  • cvs/attic/branch-additional_id_cache
  • cvs/attic/branch-e72-db-portability
  • cvs/attic/branch-e71-db-portability
  • cvs/release/ensembl/72
  • cvs/attic/ensembl_all_alleles
  • cvs/attic/branch-expression_data
  • cvs/release/ensemblgenomes/19-72
40 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.05Jun32126May252423191817161312111098654328Apr262019181514131187131Mar30292824232221181615141110987432128Feb252423222118171615141098743131Jan28272620181413121110765423Dec2117161514131098765432130Nov292524232219181615121110985432129Oct2726252221191815141312118654130SepAdded constraint to avoid fetching transcript variations on LRG transcriptsadded BaseFeatureAdaptor fetch_Iterator testsoverlapping exon check bug fixAdded extra biotypefor multiple gene numbers the zebrafish naming need to use the original name and not the modified one in future gene numbers.Update the get_all_StructuralVariations and get_all_CopyNumberVariantProbes methodsFixed small bug concerning the name of the tablesIan modified code to deal with name change for Corf genes when there are one to many.Changed regular expression for Corf gene names. Now using \wLinked xrefs to genes for 3 more external dbs.Fix bug that was causing no names to be projected in species other than zebrafish.*** empty log message ***Added change to ZFIN regular expression for Corf gene namesCCDS -> Ensembl transcript is not a one to one mapping so cannot use a key value pairs in hash. Hence now the hash uses a anonymous array to stire multiple valuesSome redundant Lite references removed from commented out tests.Additional references to Ensembl::Lite removedRemoving ancient Ensembl::Lite package that is neither used nor functionaladded / to uniprot search to make sure we do not link to uniprot_genenameadd the synonymsreturn the xref_id of the newly created xrefprint the number of synonyms added too as this is usefullDeleted data for dbprimary_acc_linkable.release changed from 62 -> 63better messages and tidyAdded confirmation before overwriting a file.Tables are dumped out to a specified directory.Set label to the descriptionAdd synonymsfix for unmapped xref having possible multiple masters having same indexset info_text to null instead of empty stringBetter messaging and tidyUpdated link to xref schema pdf.*** empty log message ***Fixed dump out option.Added option to dump out backup tables.Script for killing mysql processes by db name pattern.corrected slice start coords on Iterator method, data was valid but chunks were not quite rightadded has_window_sizechanged ccds adatabases to be useddo not remove MGI: from the stat only remove ZFIN_ID: and HGNC:. MGI number is stored with the MGI: