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Created with Raphaël 2.2.04Dec130Nov27242321109763231Oct252423201918111065327Sep252221201918131131Aug3024232117109872124Jul201917121110654328Jun27232116141396131May262419171110327Apr2013117428Mar232221171332128Feb2722151487131Jan30272625241817965415Dec139829Nov2421181611974228Oct2120141311754329Sep272623222120161514131286231Aug2625221918171615121153227Jul2521201911875128Jun2423171614109732131May2524171611109654329Apr251913118531Mar232118161510225Feb2423191817161512429Jan2625222118151211875418Dec151411ENSCORESW-2517: only compare on same strandexhaustive check on non-conventional accessionsUpdate BaseAlignFeature.pmAdded missing importremove Vega related xref sourcesThrow if features array is empty and moved checks to the top.[ENSCORESW-844]. Test names associated to mapped coordinates (seq region names).[ENSCORESW-844]. Test mapped coordinate names for ChainedAssemblyMapper.[ENSCORESW-844]. Test mapped coordinate names for TopLevelAssemblyMapper.[ENSCORESW-844]. Mapper decorates returned coordinates with the corresponding seq region names.[ENSCORESW-844]. Method to get/set the coordinate (seq region) name.[ENSCORESW-844]. Method to get/set the coordinate (seq region) name.[ENSCORESW-844]. Mapper decorates returned coordinates with the corresponding seq region names.[ENSCORESW-844]. Mapper decorates returned coordinates with the corresponding seq region names.[ENSCORESW-844]. Test mapped coordinate names for TopLevelAssemblyMapper.[ENSCORESW-844]. Test mapped coordinate names for ChainedAssemblyMapper.[ENSCORESW-844]. Test names associated to mapped coordinates (seq region names).[ENSCORESW-2508]. Somehow (difficult to find exactly where) output is emitted without newline at the end, which is[ENSCORESW-2508]. Somehow (difficult to find exactly where) output is emitted without newline at the end, which isMerge branch 'master' of https://github.com/Ensembl/ensemblrelease/91 upst…release/91 upstream/release/91Correct coordinate system variable names, based on the example.Merge pull request #220 from muffato/masterMade the script executableENSCORESW-2485: do not delete all possible mappingsMerge branch 'master' of https://github.com/Ensembl/ensemblkeep old mappings, always create new entrycapture mRNA for peptide informationkeep failed_cutoff to store alignment scoresbugfix: not all users require a passwordMerge pull request #219 from Ensembl/avullo-patch-1Create PULL_REQUEST_TEMPLATE.mdDelete PULL_REQUEST_TEMPLATE.md[ENSCORESW-2230]. Checking whether the same fragment is mapped to a different seq_region relies on checking[ENSCORESW-2428]. This is the full template with an added section about testing and improved formatting.[ENSCORESW-2428]. Use nested indentation properly.[ENSCORESW-2428]. PR template should be complete.Merge branch 'master' of https://github.com/Ensembl/ensembl[ENSCORESW-2428]. Initial skeleton template for PRs.Merge pull request #218 from ens-lgil/masterAdd tests for the method 'summary_as_hash'