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Created with Raphaël 2.2.026Jul2524232221181716151412111097432127Jun26252416131110965432130May292322212019161512987529Apr2825242322211817161514111084326Mar25232019181714131211629Feb282722212019141211765131Jan29282524232221181715141110987321Dec201918171413121130Nov292827232221201716151413129876532129Oct2625242322171615121110985432128Sep27252421Set the species_id of non-species-specific rows in the meta table to be NULL.Added meta line for patch_50_51_f.sql.Removed conflict lines.cvs/release/ens…cvs/release/ensembl/49 release/49 upstream/release/49Parser for database of aberrant 3\' and 5\' splice sites (DBASS)Being slightly more restrictive with the parsing of multispeciesChanged a left-over "species_meta" table to "meta".Bump $API_VERSION to 51.Fix bug found by unit-tests.Eh, 'assembly.default' is defnitly a species specific key.Fix errors found by unit-tests.Added external_data column to protein_feature and dna_align_feature (patch_50_51_e.sql).Updated for new format of meta table. Add external_data column to protein_feature and dna_align_feature tables, primarily for storage of user-uploaded data.Add the species_id column to the meta and coord_system test data sets.Update test table schemas for 'meta' and 'coord_system' tables usingAllow for %_collection_core_% databases to be named "%_core_51_1d" andadded some commentsadded some guineapig descriptionsMerge multispecies-core-dev development branch into HEAD.Add clear_cache() method to enable slightly cleaner emptying of featureadded canonical_transcript information in a gene for testing purposesfixed typoadded tests to check canonical_transcript information in geneadded 2 new methods: get db_name for an external_db_id and fetch db_entries for a source (db_name)tested 2 new methods: to get db_name for an external_db_id and fetch db_entries for a source (db_name)Removed stray call to get_seq_region_id_internal that crept in when porting from HEADMerging code for the stable ID mapper from HEAD into branch-ensembl-50.Merging code for the stable ID mapper from HEAD into branch-ensembl-50.added use of method bind_param_generic_fetch to allow binding parameters when using the generic fetch methodReverted previous change.fixed problem when bind_param_generic_fetch using multiple parametersReverted previous changeIncorporate the changes from patch 'd' (multispecies).removed . from end of hgnc nameadded new hgnc names and get all hgnc synonymsadde hgnc names and fixed bug in moving xrefs from translation to genesstats addedAdded new vega name sourcesadded new method: bind_param_generic_fetch to allow binding parameters instead of using parameters within sqls/meta/meta_coord/g