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Created with Raphaël 2.2.02Jul30Jun26251918163230May292321191514228Apr2423221614987428Mar2524211914131110327Feb26252119181714131210765431Jan302928272423222120181715131097318Dec171211109654328Nov26252322181514121187531Oct302925242321181715121110987432130Sep27262523191817131211109653230Aug29272322201916151298765231Jul302926Merge pull request #16 from dbolser-ebi/patch-2Self-syntenies: construct MLSS correctly.Restore read_coverage supportbasic restore of original read_coverage codeENSCORESW-941: only store an entry in the mapping_set table if there are two databases to compareBio::EnsEMBL::Feature assumes it always has adaptor property, but sometimes[ENSCORESW-938]. Allow for negative strand params to pass the numerical test.create ignore_object hash once and for all rather than for each method calltranslation stable ids are not always unique because of duplicated translations in LRGsupdated configuration for release 76when calling get_DBAdaptor, use regulation as alias for funcgenA warning more verbose, allow no alias, formattingMerge pull request #15 from ens-carlos/masterremoving empty line in test filemapping data patched to release 76, including SQLlite supportadded warning method from Bio::EnsEMBL::Utils::Exceptioncolumns swapped in SQL query to fetch ensembl-vega IDs correctlyRevert commit, as eq is more resilient to weirdness than ==.Merge branch 'master' of https://github.com/Ensembl/ensemblExtra explanatory notes to prevent the need for future debugging.No Mr Tab, I expect you to die.[ENSCORESW-816] Patch attempting to fix reused contigs being destroyed as duplicates. Also formatting changes.Removed the duplicate removal detection. We really can have these now. I would prefer a better way to detect them thoughFixing the test suite for the right mappingsAdding the attrib types missingRecreating the multi mapping contig issueMerge pull request #14 from sarahhunt/masterinitial PostgreSQL supportENSCORESW-928: use coding exon overlap score if exists[ENSCORESW-922]. Correct condition for features with negative slice relative coordinates.[ENSCORESW-922]. Correct condition for features with negative slice relative coordinates.[ENSCORESW-922]. Correct condition for features with negative slice relative coordinates.[ENSCORESW-922]. Correct condition for features with negative slice relative coordinates.[ENSCORESW-922]. Problem with circular chromosomes when feature start/end wrt slice are negative.Revert "[ENSCORESW-922]. Can use the same code fragment for both circular/non-circular chromosomes."Revert "[ENSCORESW-922]. Problem with circular chromosomes when feature start/end wrt slice are negative."[ENSCORESW-922]. Can use the same code fragment for both circular/non-circular chromosomes.[ENSCORESW-922]. Problem with circular chromosomes when feature start/end wrt slice are negative.ENSCORESW-926: add update method for sliceAdaptorENSCORESW-914: idesc should really be xref.description field