Skip to content
Snippets Groups Projects
Select Git revision
  • 101_provider_metakeyupdate
  • 102
  • 102_provider_metakeyupdate
  • 102_testdbpatching
  • 102_versionbump
  • 103_provider_metakeyupdate
  • 103_testdbpatch
  • 103_versionbump
  • 104_testdbpatch
  • 104_versionbump
  • 105_version_bump
  • 108_schema_patch
  • 108_versionbump
  • 109_versionbump
  • Bugfix/ComparaTest
  • Bugfix/CompressedHexDb
  • Bugfix/CompressedHexDb_103
  • Bugfix/Null_translation_id
  • Bugfix/PingErrorMsg
  • Bugfix/TestDbs
  • cpan/113.0.0
  • cpan/112.0.0
  • cvs/release/ensembl/74
  • cvs/release/ensembl/73
  • cvs/attic/branch-e73-db-portability
  • cvs/attic/tag-ensemblgenomes-20-73
  • cvs/release/ensemblgenomes/20-73
  • cvs/attic/unconventional_removal_branch
  • cvs/attic/api_cleanup
  • cvs/attic/unconventional_removal
  • cvs/attic/api_removal
  • cvs/attic/remove_dnac
  • cvs/attic/branch-switchable_adaptors
  • cvs/attic/branch-additional_id_cache
  • cvs/attic/branch-e72-db-portability
  • cvs/attic/branch-e71-db-portability
  • cvs/release/ensembl/72
  • cvs/attic/ensembl_all_alleles
  • cvs/attic/branch-expression_data
  • cvs/release/ensemblgenomes/19-72
40 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.026Jul2524232019181613119543229Jun282726252322212019181514131211876131May30292824232221171615141098632127Apr26252423201918171613121110543130Mar29282724232221201916151462129Feb282726242322212017161514131098762131Jan302524231918pipeline for release production, for scripts which used to be run after core databases handoverAdding the scope guard which is a way we can cause code to be executed even during a die. Very useful for non-global resource cleanup operations (finally blocks)Docs on --host was wrongDelete a database with minimal lock interuptions and without having to use direct data file access and flushes.Modified readme. Later dumps will have a "primary_assembly" fileUse a CSS class to display a buttonMissed the end of a paragraphMoved the filters around and made ensembldoxygenfilter.pl a standalone script to avoid having to edit the Doxygen PerlFilter installation which was our only original way of doing this. Namespacing also means dependency management is easier with less to level packages getting in the wayAdded xref sources for Anopheles darlingi.[ENSCORESW-202] and [ENSCORESW-203]. New ArrayExpress parser added as well as new UniParc parser. We also do the UniParc parsing and inserting into a new table in the xref schema.instructions on how to generate and explore an xref mind mapupdated instructions on producing the ontology databaseadded option to delete the UNKNOWN ontologyUse IO::File rather than FileHandledata updates for xref mindmap dbschema for xref mindmap db*** empty log message ***script to generate a Freeplane xref mindmapChanging the AssemblyInfo adaptor name to Assembly due to concerns raised by other members in the Ensembl team. Info is too vague & therefore redundant. Moved across from HEAD.Already have this in the ensembl-test package. no need for it hereChanging the AssemblyInfo adaptor name to Assembly due to concerns raised by other members in the Ensembl team. Info is too vague & therefore redundantENSCORESW-152. Committing the low cardinality and low row count caching framework into the core API. Implement the correct method from BaseAdaptor to have your values cached in local memoryfixed usage sectionHopefully cd in a subshell does the businessBad command line argGiving the database a name so we do not leak a bad nameMaking the documentation reflect what is occuring in the codeAdding an iterator for subseqs to the Slice object. Means a lot of our code which deals with iteration of slices can delegate to this for its logic.2 spacing not 4 spacingMake the dumping more randomNew tests for working with circular slices. Credit goes to Jay for developing these essential tests<> not <=>; this is SQL not Perlremove test for exonerate method, check all dna mapping files for refseq xrefsRolling back changes to the code state in 67. Unknown logic change has caused a logic regressionpass all arguments to get_all_VariationFeatures through to variation APIMissing the prevent_disconnect from podcorrected port parameter typeFixed broken line 3703 in xref_config.inicvs/release/ens…cvs/release/ensembl/67 release/67 upstream/release/67doc on creating the stable_id databaseadded explanation to the existence of the is_current flag