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Created with Raphaël 2.2.029Jan28272423222120181715131097318Dec171211109654328Nov26252322181514121187531Oct302925242321181715121110987432130Sep27262523191817131211109653230Aug29272322201916151298765231Jul302926252423221918171615111043228Jun27262421201918171312111065331May3029282322211715141310987321Automatic merging of dev into masterthere can be several statistics for prediction_countMerge branch 'experimental/fixgtfdumper'Automatic merging of dev into mastercorrected argument for structural_variation countPreliminary commit of a more inclusive get_nearest_Gene method using Nathan’s largely unedited code.Automatic merging of dev into mastercanonical_annotation has been retired, removing leftover variablesMerge branch 'Anacode-experimental/db-portability/master'Found another delete using IN rather than joins.Addition of Apache2.0 license to all code.Merge branch 'master' of https://github.com/Ensembl/ensemblLICENSE should not be executable[ENSCORESW-822]. Bio::EnsEMBL::Utils::BiotypeMapper module retired.[ENSCORESW-822]. Removed textual reference to BiotypeMapper[ENSCORESW-822]. BiotypeManager decommissioned in favour of Biotype manager directly talking to the production db.Automatic merging of dev into masterannual copyright update for 2014update contact detailsHaving to fix the problems with OperonTranscriptAdaptor and OperonAdaptor. We must have the columns for dates in the bind variables not in the explicit bindsmerging in new code for LANG typesMerge branch 'experimental/db-portability/master' of https://github.com/Anacode/ensembl into Anacode-experimental/db-portability/mastermissed onemodifying the control codes to avoid non-ascii characters being usedadding the c lang and ctype env variables. otherwise sed can failEmail blatter was ignoring the wrong fileUpdating for our new possible darwin changesHopefully the command will work now. Had to revert back to usingAdding a skip to make sure we do not replace the email in the file we are replacingFixing some other errors in these scriptsFixing after comments from Simon about sedCured a self-referential foreign key, and made the syntax more exactIntroducing the all mighty email blatter. Leaves only URLs behindUpdated for our Apache 2.0 licenseNew test for valid foreign keys in InnoDB applications. foreign_keys.sql cleaned. Tabs assassinated.AttributeAdaptor.pm: restore optimised join DELETE for MySQL.uc(‘c’) to help with sql-lite support. Case mistake was ignored by MySQL.[ENSCORESW-799] This script is out of date, and has been marked as such.Adding the new attributes for showing a lack of detected cds and mrna enddo not sort utrs