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Created with Raphaël 2.2.05Oct327Sep252221201918131131Aug3024232117109872124Jul201917121110654328Jun27232116141396131May262419171110327Apr2013117428Mar232221171332128Feb2722151487131Jan30272625241817965415Dec139829Nov2421181611974228Oct2120141311754329Sep272623222120161514131286231Aug2625221918171615121153227Jul2521201911875128Jun2423171614109732131May2524171611109654329Apr251913118531Mar232118161510225Feb2423191817161512429Jan2625222118151211875418Dec151411108432130Nov2726252423201918171612[ENSCORESW-2168]. Additional tests to cover design extensions.Merge pull request #216 from mn1/master[ENSCORESW-2168]. Initial prototype implementation of an immutable centered interval tree, to be used in the mapper instead of binary search.[ENSCORESW-2168]. Initial tests for the candidate replacements of binary searches in mappers.This script has been replaced with https://github.com/Ensembl/ensembl-production/blob/master/scripts/copy_database.plUpdates to add align_type column to dna_align_feature and protein_align_feature tables to support multiple align types and remove external_data column from dna_align_feature table - ENSCORESW-1937patched test databases for schema_version 91 updateschema_version updated to 91[ENSCORESW-2343]. Obtained consensus. Enable triggering dependent build on regulation.update to new RefSeq format[ENSCORESW-2143]. Previously encrypted token was for the fork.Merge pull request #214 from avullo/master[ENSCORESW-2343]. Bug as we want the total number of seconds represented by the timedelta structure. Use more powerful token, encrypt it and use as global variable in the triggering script.[ENSCORESW-2343]. Use correct token from compara[ENSCORESW-2343]. Use repo specific authorisation tokens.[ENSCORESW-2343]. Trigger compara/rest. Notify to core channel in genomes-ebi.[ENSCORESW-2343]. More correct message.[ENSCORESW-2343]. Avoid circular dependency. Break cycle in favour of ensembl-test.[ENSCORESW-2343]. Scripts to trigger dependent builds and check builds through the TravisCI API.Fix merge conflicts.Triggering dependent builds as build stage.User ok on the default distro by granting privileges.To send notifications privately to me while doing the tests on the forked repo.Merge branch 'master' of github.com:Ensembl/ensemblUpdate script for move to EBI serversAttempt to bypass precise dist restriction.trusty does not recognise travis user.[ENSCORESW-2386]. Handling dumping sequence for empty translations.Automatically repair the table if myisamchk report any corruptionENSCORESW-2379: off by one errorMerge pull request #213 from muffato/spurtENSCORESW-2379: use seq_region_end, not endAdded the opposite of slurp: spurtRemoved special treatment for funcgen adaptors, coord systems have been removed from funcgen databases.avoid rounding errorsremove quotesDeadlock still detected, allow restarting the transaction.experimental/in…experimental/innodb_supportSupport analysis storage with proper transaction level code.Allow translation start and stop to be defined within a transcript-level seq editrelease/89 upst…release/89 upstream/release/89Allow translation start and stop to be defined within a transcript-level seq editrelease/88 upst…release/88 upstream/release/88