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Created with Raphaël 2.2.020May191715131211876530Apr272322212015149872131Mar262524191817161312119654326Feb25191817161110985432130Jan292726222120191615147618Dec171311109865432126Nov252421201817141312111087654331Oct3029272421201716151310976229Sep23221812109852127Aug26212019181513121198765432131Jul2928262524232221181716151412111097432127Jun262524161311109allow linkage_type in go_xref to be nullpatch to set to NULL version column in coord_system table instead of blankstore: added undef check for db_release for is NULL clauseoopsfixed Oldlinks to include use strictWallaby (Macropus eugenii) added.Edited to remove syntax complaint - ERROR 1064 (42000) at line 10: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near ''is_constitutive' BOOLEAN NOT NULL DEFAULT 0' at line 1.Fixed a misspeling.Don't use 'Bio::EnsEMBL::Utils::Argument'.Exit when we try to load a newer version of a file. The database willThe get_db_privs() did not parse all GRANTS returned from "SHOW GRANTSAdd patch file for the 'is_constitutive' patch, adding a column to theAdd the 'is_constitutive' column to the exon table.Small fixes.small fix.Add code to write the OBO file name, and the date stored withing theAdd a meta table.Script to calculate the constitutive exons and add the information to the is_constitutiveMinor change to comment.support for vega transcript associated featuresseq_edits processed on seq_regions. A cache of regions are made on creation of the adaptor, this hash is then used for fast testing to see if any seq_edit are needed for a given seq_regionccds database changesbug fix for -stats optionadd Splicing event adaptorsComputes and stores the transitive closure over all 'is_a' and 'part_of'Simplistic OBO v1.2 file parser that also loads the parsed data into anThis SQL file will create an empty ensembl_ontology_NN database.modified to use new_fast method in the constructor for speed purposesmodified implementation of translate method to use codon_table attribute as in Transcript objectadded method to update a MiscSet objectadd totals of stable ids not found for each sourcesub transcript_display_xref_sources addedadded Fantom source for mouseparser for Fantom dataGo status set to XREF now instead of KNWONXREF so that if a gene has a GO reference it does not automatically get set to be a known gene. Added new external source Fantomalternative splicing tables added, dependent_xref table added, go_xref types that were missed somehow have now been addedgo_xref types that were missed somehow have now been addedsplicing event tables addeddependent_xref table addedmore Vega tweaks